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SRR836116,SRR836117,SRR836118,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRR836116 | 953 | Heinz2013effect | GRO-seq | circularization | control | True | 2 | 1 |
| SRR836117 | 954 | Heinz2013effect | GRO-seq | circularization | experimental | False | 3 | 1 |
| SRR836118 | 955 | Heinz2013effect | GRO-seq | circularization | control | True | 1 | 1 |
| SRR836119 | 956 | Heinz2013effect | GRO-seq | circularization | experimental | False | 2 | 1 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR836116 | M. musculus | primary cell | peritoneal macrophage | C57BL/6J | |||
| SRR836117 | M. musculus | primary cell | peritoneal macrophage | C57BL/6J | |||
| SRR836118 | M. musculus | primary cell | peritoneal macrophage | BALBc/J | |||
| SRR836119 | M. musculus | primary cell | peritoneal macrophage | BALBc/J |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR836116 | no treatment | None | None | None | |
| SRR836117 | treatment | Kdo2-Lipid A (100 ng/mL) | -1 hr | 0 hr | 1 hr |
| SRR836118 | no treatment | None | None | None | |
| SRR836119 | treatment | Kdo2-Lipid A (100 ng/mL) | -1 hr | 0 hr | 1 hr |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR836116 | 48 | 64,240,279 | 0.59046 | 0.7412 | 3.34877 | 0.61386 | 2 | 2 |
| SRR836117 | 48 | 62,664,227 | 0.70879 | 0.7434 | 2.93723 | 0.57124 | 3 | 1 |
| SRR836118 | 48 | 65,335,326 | 0.48961 | 0.7615 | 2.91416 | 0.73575 | 1 | 1 |
| SRR836119 | 48 | 62,872,237 | 0.52863 | 0.68 | 2.84642 | 0.67221 | 2 | 1 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR836116 | 24295 | 9457 | 7307 | 5457 | 22639 | 6243 | 8255 | 5925 |
| SRR836117 | 20866 | 8227 | 6604 | 4236 | 18010 | 5513 | 6713 | 3941 |
| SRR836118 | 29463 | 11211 | 8450 | 7797 | 29366 | 6787 | 11661 | 8453 |
| SRR836119 | 27733 | 10780 | 8617 | 6439 | 24534 | 6226 | 9771 | 6234 |
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