DBNascent | Samples

SRR1772449,SRR1772450,SRR1772451,...

**Downloads**
Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
ZIP archive	ZIP archive	ZIP archive	ZIP archive
For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

**Technical details**
Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR1772449	1013	Illingworth2016polycomb	GRO-seq	ligation	control	False	3	1
SRR1772450	1014	Illingworth2016polycomb	GRO-seq	ligation	control	False	4	2
SRR1772451	1015	Illingworth2016polycomb	GRO-seq	ligation	control	False	3	1
SRR1772452	1016	Illingworth2016polycomb	GRO-seq	ligation	control	False	4	2

**Cellular details**
Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR1772449	M. musculus	cell line	ESC	HV1.5			Hhex-Venus reporter
SRR1772450	M. musculus	cell line	ESC	HV1.5			Hhex-Venus reporter
SRR1772451	M. musculus	cell line	ESC	HV1.5			Hhex-Venus reporter
SRR1772452	M. musculus	cell line	ESC	HV1.5			Hhex-Venus reporter

**Conditions**
Sample name	Condition type	Treatment	Start time	End time	Duration
SRR1772449	treatment	cell sorting HV-	None	None	None
SRR1772450	treatment	cell sorting HV-	None	None	None
SRR1772451	treatment	cell sorting HV+	None	None	None
SRR1772452	treatment	cell sorting HV+	None	None	None

**Sample metrics**
Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR1772449	42	39,093,004	0.6823	0.7978	6.01124	0.36484	3	3
SRR1772450	42	37,487,819	0.9283	0.5609	8.08333	0.11422	4	4
SRR1772451	42	48,907,261	0.78743	0.7624	6.81452	0.3615	3	3
SRR1772452	42	36,872,238	0.90173	0.5275	9.3731	0.15139	4	5

**Bidirectionals**
Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR1772449	94267	2785	57375	8153	16166	1167	5862	3467
SRR1772450	10443	823	3825	1035	5237	564	1420	1515
SRR1772451	66342	1652	39522	5639	12678	670	4396	3229
SRR1772452	13990	718	5776	1365	5817	421	1539	1825