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SRR826227,SRZ826225,SRZ826225,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRR826227 | 1420 | Lam2013rev | GRO-cap | circularization | experimental | False | 4 | 1 |
| SRZ826225 | 1423 | Lam2013rev | GRO-cap | circularization | control | True | 3 | 1 |
| SRZ826225 | 1424 | Lam2013rev | GRO-cap | circularization | control | True | 3 | 1 |
| SRZ826209 | 1421 | Lam2013rev | GRO-seq | circularization | control | False | 3 | 1 |
| SRZ826217 | 1422 | Lam2013rev | GRO-seq | circularization | experimental | False | 4 | 1 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR826227 | M. musculus | cell line | RAW264.7 | BirA (stable); Rev-erb-alpha BLRP (stable) | BirA; Rev-erb-alpha | ||
| SRZ826225 | M. musculus | cell line | RAW264.7 | ||||
| SRZ826225 | M. musculus | cell line | RAW264.7 | ||||
| SRZ826209 | M. musculus | primary cell | bone marrow derived macrophage | C57BL/6 | Rev-erb-alpha fl/fl; Rev-erb-beta fl/fl | ||
| SRZ826217 | M. musculus | primary cell | bone marrow derived macrophage | C57BL/6 | Rev-erb-alpha fl/fl; Rev-erb-beta fl/fl; Tie2-Cre |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR826227 | no treatment | None | None | None | |
| SRZ826225 | no treatment | None | None | None | |
| SRZ826225 | no treatment | None | None | None | |
| SRZ826209 | no treatment | None | None | None | |
| SRZ826217 | no treatment | None | None | None |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR826227 | 50 | 8,910,234 | 0.70769 | 0.8692 | 7.11386 | 0.30844 | 4 | 4 |
| SRZ826225 | 50 | 24,049,802 | 0.75146 | 0.8579 | 6.35026 | 0.37834 | 3 | 3 |
| SRZ826225 | 50 | 24,049,802 | 0.75146 | 0.8579 | 6.35026 | 0.37834 | 3 | 3 |
| SRZ826209 | 30 | 121,741,863 | 0.7594 | 0.6797 | 2.63791 | 0.58446 | 3 | 1 |
| SRZ826217 | 1 | 185,732,020 | 0.86157 | 0.6543 | 2.73525 | 0.50218 | 4 | 1 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR826227 | None | None | None | None | None | None | None | None |
| SRZ826225 | None | None | None | None | None | None | None | None |
| SRZ826225 | None | None | None | None | None | None | None | None |
| SRZ826209 | 31819 | 10976 | 10584 | 7405 | 26413 | 6860 | 10339 | 7183 |
| SRZ826217 | 30148 | 10047 | 10153 | 7006 | 24219 | 6574 | 9200 | 6445 |
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