DBNascent | Samples

SRR8111714,SRR8111715,SRR8111716,...

**Downloads**
Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
ZIP archive	ZIP archive	ZIP archive	ZIP archive
For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

**Technical details**
Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR8111714	1435	Leroy2019ledgf	PRO-seq	ligation	control	True	3	1
SRR8111715	1436	Leroy2019ledgf	PRO-seq	ligation	experimental	False	2	1
SRR8111716	1437	Leroy2019ledgf	PRO-seq	ligation	experimental	False	2	1
SRR8111717	1438	Leroy2019ledgf	PRO-seq	ligation	experimental	False	3	1
SRR8111718	1439	Leroy2019ledgf	PRO-seq	ligation	experimental	False	2	1

**Cellular details**
Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR8111714	H. sapiens	primary cell	myoblast
SRR8111715	H. sapiens	primary cell	myoblast	clone 2		Hdgf -/-
SRR8111716	H. sapiens	primary cell	myoblast	clone 10		Hdgf -/-
SRR8111717	H. sapiens	primary cell	myoblast	clone 2		Hdgf -/-; Hdgf exogenous (stable)
SRR8111718	H. sapiens	primary cell	myoblast	clone 10		Hdgf -/-; Hdgf exogenous (stable)

**Conditions**
Sample name	Condition type	Treatment	Start time	End time	Duration
SRR8111714	no treatment		None	None	None
SRR8111715	no treatment		None	None	None
SRR8111716	no treatment		None	None	None
SRR8111717	no treatment		None	None	None
SRR8111718	no treatment		None	None	None

**Sample metrics**
Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR8111714	35	77,751,401	0.6603	0.4297	4.96735	0.47915	3	2
SRR8111715	35	44,158,103	0.63083	0.5086	5.78311	0.45463	2	3
SRR8111716	35	71,266,334	0.60041	0.5248	4.38932	0.54487	2	2
SRR8111717	35	76,967,780	0.65609	0.4045	4.60294	0.48926	3	2
SRR8111718	35	108,355,987	0.62105	0.4253	3.41215	0.57561	2	2

**Bidirectionals**
Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR8111714	59388	16138	26475	17322	52094	12083	24759	15265
SRR8111715	43706	14211	18984	11390	38510	11684	17426	9969
SRR8111716	52314	16706	22084	14544	45994	11533	21630	12886
SRR8111717	41603	14488	17542	10464	37775	11565	17352	9512
SRR8111718	48845	15929	20387	13295	45338	11292	21652	12481