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SRR816998,SRR816999,SRR817000,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRR816998 | 1444 | Li2013functional | GRO-seq | circularization | experimental | False | 1 | 1 |
| SRR816999 | 1445 | Li2013functional | GRO-seq | circularization | experimental | False | 1 | 2 |
| SRR817000 | 1446 | Li2013functional | GRO-seq | circularization | control | True | 1 | 1 |
| SRR817001 | 1447 | Li2013functional | GRO-seq | circularization | control | True | 1 | 2 |
| SRR817002 | 1448 | Li2013functional | GRO-seq | circularization | experimental | False | 3 | 1 |
| SRR817003 | 1449 | Li2013functional | GRO-seq | circularization | experimental | False | 2 | 1 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR816998 | H. sapiens | cell line | MCF7 | ||||
| SRR816999 | H. sapiens | cell line | MCF7 | ||||
| SRR817000 | H. sapiens | cell line | MCF7 | ||||
| SRR817001 | H. sapiens | cell line | MCF7 | ||||
| SRR817002 | H. sapiens | cell line | MCF7 | siRNA Smc3 | |||
| SRR817003 | H. sapiens | cell line | MCF7 | siRNA Smc3 |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR816998 | treatment | 17-beta-estradiol (100 nM) | -1 hr | 0 hr | 1 hr |
| SRR816999 | treatment | 17-beta-estradiol (100 nM) | -1 hr | 0 hr | 1 hr |
| SRR817000 | vehicle | ethanol | -1 hr | 0 hr | 1 hr |
| SRR817001 | vehicle | ethanol | -1 hr | 0 hr | 1 hr |
| SRR817002 | treatment | 17-beta-estradiol (100 nM) | -1 hr | 0 hr | 1 hr |
| SRR817003 | vehicle | ethanol | -1 hr | 0 hr | 1 hr |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR816998 | 42 | 27,311,768 | 0.34174 | 0.8747 | 2.41447 | 0.70065 | 1 | 1 |
| SRR816999 | 36 | 24,610,291 | 0.36489 | 0.7876 | 2.01538 | 0.65631 | 1 | 1 |
| SRR817000 | 42 | 33,784,687 | 0.33753 | 0.8756 | 2.34235 | 0.71365 | 1 | 1 |
| SRR817001 | 36 | 23,310,714 | 0.29597 | 0.789 | 1.78349 | 0.72546 | 1 | 1 |
| SRR817002 | 48 | 41,837,138 | 0.72972 | 0.7595 | 4.11433 | 0.33652 | 3 | 2 |
| SRR817003 | 48 | 31,102,329 | 0.55396 | 0.7958 | 2.93304 | 0.48867 | 2 | 1 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR816998 | 22334 | 8941 | 9735 | 3884 | 20725 | 8593 | 9011 | 3642 |
| SRR816999 | 18197 | 6885 | 8391 | 2582 | 12287 | 5196 | 4938 | 2282 |
| SRR817000 | 25515 | 10379 | 10858 | 4734 | 24207 | 9301 | 10664 | 4714 |
| SRR817001 | 19011 | 7367 | 8638 | 2781 | 12872 | 5709 | 5077 | 2331 |
| SRR817002 | 24623 | 11387 | 9921 | 3225 | 17671 | 8616 | 6261 | 2682 |
| SRR817003 | 22580 | 10181 | 9084 | 3379 | 16392 | 8157 | 5769 | 2686 |
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