DBNascent | Samples

SRZ6497147,SRZ6497149,SRZ6497151,...

**Downloads**
Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
ZIP archive	ZIP archive	ZIP archive	ZIP archive
For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

**Technical details**
Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRZ6497147	1480	Li2018lncrna	GRO-seq	ligation	control	False	3	1
SRZ6497149	1481	Li2018lncrna	GRO-seq	ligation	control	False	3	2
SRZ6497151	1482	Li2018lncrna	GRO-seq	ligation	experimental	False	2	1
SRZ6497153	1483	Li2018lncrna	GRO-seq	ligation	experimental	False	2	2
SRZ6497155	1484	Li2018lncrna	GRO-seq	ligation	control	False	3	1
SRZ6497157	1485	Li2018lncrna	GRO-seq	ligation	experimental	False	3	1

**Cellular details**
Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRZ6497147	H. sapiens	cell line	BJ			tamoxifen-inducible oncogenic H-RasV12
SRZ6497149	H. sapiens	cell line	BJ			tamoxifen-inducible oncogenic H-RasV12
SRZ6497151	H. sapiens	cell line	BJ			tamoxifen-inducible oncogenic H-RasV12
SRZ6497153	H. sapiens	cell line	BJ			tamoxifen-inducible oncogenic H-RasV12
SRZ6497155	H. sapiens	cell line	TIG-3			tamoxifen-inducible oncogenic H-RasV12
SRZ6497157	H. sapiens	cell line	TIG-3			tamoxifen-inducible oncogenic H-RasV12

**Conditions**
Sample name	Condition type	Treatment	Start time	End time	Duration
SRZ6497147	no treatment		None	None	None
SRZ6497149	no treatment		None	None	None
SRZ6497151	treatment	hydroxytamoxifen (100 nM)	-14 day	0 day	14 day
SRZ6497153	treatment	hydroxytamoxifen (100 nM)	-14 day	0 day	14 day
SRZ6497155	no treatment		None	None	None
SRZ6497157	treatment	hydroxytamoxifen (100 nM)	-14 day	0 day	14 day

**Sample metrics**
Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRZ6497147	65	54,379,739	0.67171	0.9515	2.58569	0.41705	3	1
SRZ6497149	65	76,576,582	0.7219	0.9546	2.58142	0.40237	3	1
SRZ6497151	65	43,515,116	0.60752	0.9431	2.10218	0.46871	2	1
SRZ6497153	65	62,398,968	0.59388	0.9393	2.15581	0.5076	2	1
SRZ6497155	65	59,508,921	0.70662	0.9555	2.21094	0.39222	3	1
SRZ6497157	65	72,565,270	0.65142	0.9468	2.25919	0.52846	3	1

**Bidirectionals**
Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRZ6497147	36193	13609	14912	7100	22354	8519	8976	4822
SRZ6497149	40732	14669	16921	8575	26302	8778	10963	6227
SRZ6497151	35428	11795	14840	7981	22250	7725	8815	5492
SRZ6497153	40771	13297	16762	10038	28222	8305	11779	7673
SRZ6497155	32544	11923	13975	6134	20567	7869	8238	4275
SRZ6497157	49929	13091	20938	14983	34647	8608	14829	10708