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SRR4019503,SRR4019504,SRR4019505,...
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. |
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRR4019503 | 1731 | Lu2017nascent | GRO-seq variant | ligation | control | True | 5 | 1 |
| SRR4019504 | 1732 | Lu2017nascent | GRO-seq variant | ligation | control | True | 4 | 1 |
| SRR4019505 | 1733 | Lu2017nascent | GRO-seq variant | ligation | control | True | 4 | 2 |
| SRR4019506 | 1734 | Lu2017nascent | GRO-seq variant | ligation | control | True | 4 | 1 |
| SRR4019507 | 1735 | Lu2017nascent | GRO-seq variant | ligation | control | True | 5 | 1 |
| SRR4019508 | 1736 | Lu2017nascent | GRO-seq variant | ligation | control | True | 4 | 2 |
| SRR4019509 | 1737 | Lu2017nascent | GRO-seq variant | ligation | control | True | 4 | 1 |
| SRR4019510 | 1738 | Lu2017nascent | GRO-seq variant | ligation | control | True | 5 | 1 |
| SRR4019511 | 1739 | Lu2017nascent | GRO-seq variant | ligation | control | True | 4 | 2 |
| SRR4019512 | 1740 | Lu2017nascent | GRO-seq variant | ligation | control | True | 4 | 1 |
| SRR4019513 | 1741 | Lu2017nascent | GRO-seq variant | ligation | control | True | 5 | 1 |
| SRR4019514 | 1742 | Lu2017nascent | GRO-seq variant | ligation | control | True | 4 | 2 |
| SRR4019515 | 1743 | Lu2017nascent | GRO-seq variant | ligation | control | True | 4 | 1 |
| SRR4019516 | 1744 | Lu2017nascent | GRO-seq variant | ligation | control | True | 5 | 1 |
| SRR4019517 | 1745 | Lu2017nascent | GRO-seq variant | ligation | control | True | 4 | 2 |
| SRR4019518 | 1746 | Lu2017nascent | GRO-seq variant | ligation | control | True | 5 | 1 |
| SRR4019519 | 1747 | Lu2017nascent | GRO-seq variant | ligation | control | True | 3 | 1 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR4019503 | P. falciparum | organism | early ring parasite | 3D7 | |||
| SRR4019504 | P. falciparum | organism | late ring parasite | 3D7 | |||
| SRR4019505 | P. falciparum | organism | late ring parasite | 3D7 | |||
| SRR4019506 | P. falciparum | organism | early trophozoite parasite | 3D7 | |||
| SRR4019507 | P. falciparum | organism | early trophozoite parasite | 3D7 | |||
| SRR4019508 | P. falciparum | organism | early trophozoite parasite | 3D7 | |||
| SRR4019509 | P. falciparum | organism | late trophozoite parasite | 3D7 | |||
| SRR4019510 | P. falciparum | organism | late trophozoite parasite | 3D7 | |||
| SRR4019511 | P. falciparum | organism | late trophozoite parasite | 3D7 | |||
| SRR4019512 | P. falciparum | organism | early schizont parasite | 3D7 | |||
| SRR4019513 | P. falciparum | organism | early schizont parasite | 3D7 | |||
| SRR4019514 | P. falciparum | organism | early schizont parasite | 3D7 | |||
| SRR4019515 | P. falciparum | organism | late schizont parasite | 3D7 | |||
| SRR4019516 | P. falciparum | organism | late schizont parasite | 3D7 | |||
| SRR4019517 | P. falciparum | organism | late schizont parasite | 3D7 | |||
| SRR4019518 | P. falciparum | organism | gametoyte stage III parasite | NF54 | |||
| SRR4019519 | P. falciparum | organism | gametoyte stage III parasite | NF54 |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR4019503 | no treatment | None | None | None | |
| SRR4019504 | no treatment | None | None | None | |
| SRR4019505 | no treatment | None | None | None | |
| SRR4019506 | no treatment | None | None | None | |
| SRR4019507 | no treatment | None | None | None | |
| SRR4019508 | no treatment | None | None | None | |
| SRR4019509 | no treatment | None | None | None | |
| SRR4019510 | no treatment | None | None | None | |
| SRR4019511 | no treatment | None | None | None | |
| SRR4019512 | no treatment | None | None | None | |
| SRR4019513 | no treatment | None | None | None | |
| SRR4019514 | no treatment | None | None | None | |
| SRR4019515 | no treatment | None | None | None | |
| SRR4019516 | no treatment | None | None | None | |
| SRR4019517 | no treatment | None | None | None | |
| SRR4019518 | no treatment | None | None | None | |
| SRR4019519 | no treatment | None | None | None |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR4019503 | 35 | 8,565,739 | 0.83532 | 0.2619 | 2.29259 | 0.0553 | 5 | 1 |
| SRR4019504 | 35 | 17,797,750 | 0.84314 | 0.5777 | 3.16847 | 0.10984 | 4 | 2 |
| SRR4019505 | 35 | 20,199,207 | 0.74109 | 0.6954 | 5.46411 | 0.15908 | 4 | 3 |
| SRR4019506 | 51 | 13,437,891 | 0.74221 | 0.6082 | 6.7169 | 0.11689 | 4 | 3 |
| SRR4019507 | 51 | 4,045,767 | 0.79094 | 0.4806 | 16.7158 | 0.02648 | 5 | 5 |
| SRR4019508 | 35 | 9,547,621 | 0.55433 | 0.708 | 3.06474 | 0.19419 | 4 | 2 |
| SRR4019509 | 51 | 9,958,672 | 0.47699 | 0.7444 | 5.20121 | 0.2346 | 4 | 3 |
| SRR4019510 | 51 | 183,667 | 0.38542 | 0.2777 | 11.7143 | 0.0118 | 5 | 5 |
| SRR4019511 | 35 | 24,284,536 | 0.75718 | 0.6691 | 5.16829 | 0.15478 | 4 | 3 |
| SRR4019512 | 51 | 13,660,968 | 0.80986 | 0.8636 | 20.7702 | 0.08346 | 4 | 5 |
| SRR4019513 | 51 | 240,700 | 0.49555 | 0.4925 | 12.8696 | 0.02028 | 5 | 5 |
| SRR4019514 | 35 | 22,961,722 | 0.81754 | 0.7426 | 7.26371 | 0.13135 | 4 | 4 |
| SRR4019515 | 51 | 7,660,522 | 0.67363 | 0.8295 | 6.62323 | 0.12124 | 4 | 3 |
| SRR4019516 | 51 | 890,477 | 0.60851 | 0.5663 | 13.0018 | 0.0395 | 5 | 5 |
| SRR4019517 | 35 | 14,242,354 | 0.81 | 0.5557 | 7.30035 | 0.12381 | 4 | 4 |
| SRR4019518 | 35 | 5,384,241 | 0.55126 | 0.6286 | 2.83763 | 0.16338 | 5 | 1 |
| SRR4019519 | 35 | 15,901,457 | 0.72787 | 0.6795 | 2.43246 | 0.21415 | 3 | 1 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR4019503 | None | None | None | None | None | None | None | None |
| SRR4019504 | None | None | None | None | None | None | None | None |
| SRR4019505 | None | None | None | None | None | None | None | None |
| SRR4019506 | None | None | None | None | None | None | None | None |
| SRR4019507 | None | None | None | None | None | None | None | None |
| SRR4019508 | None | None | None | None | None | None | None | None |
| SRR4019509 | None | None | None | None | None | None | None | None |
| SRR4019510 | None | None | None | None | None | None | None | None |
| SRR4019511 | None | None | None | None | None | None | None | None |
| SRR4019512 | None | None | None | None | None | None | None | None |
| SRR4019513 | None | None | None | None | None | None | None | None |
| SRR4019514 | None | None | None | None | None | None | None | None |
| SRR4019515 | None | None | None | None | None | None | None | None |
| SRR4019516 | None | None | None | None | None | None | None | None |
| SRR4019517 | None | None | None | None | None | None | None | None |
| SRR4019518 | None | None | None | None | None | None | None | None |
| SRR4019519 | None | None | None | None | None | None | None | None |
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