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SRR6782092,SRR6782093,SRR6782094,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRR6782092 | 1922 | Nelson2018ppar | GRO-seq | circularization | control | True | 3 | 1 |
| SRR6782093 | 1923 | Nelson2018ppar | GRO-seq | circularization | experimental | False | 1 | 1 |
| SRR6782094 | 1924 | Nelson2018ppar | GRO-seq | circularization | experimental | False | 2 | 2 |
| SRR6782095 | 1925 | Nelson2018ppar | GRO-seq | circularization | experimental | False | 2 | 3 |
| SRR6782096 | 1926 | Nelson2018ppar | GRO-seq | circularization | control | True | 2 | 2 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR6782092 | M. musculus | primary cell | peritoneal macrophage | C57BL/6 | |||
| SRR6782093 | M. musculus | primary cell | peritoneal macrophage | C57BL/6 | |||
| SRR6782094 | M. musculus | primary cell | peritoneal macrophage | C57BL/6 | |||
| SRR6782095 | M. musculus | primary cell | peritoneal macrophage | C57BL/6 | |||
| SRR6782096 | M. musculus | primary cell | peritoneal macrophage | C57BL/6 |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR6782092 | vehicle | DMSO | -24 hr | 0 hr | 1 day |
| SRR6782093 | treatment | rosiglitazone (1 microM) | -24 hr | 0 hr | 1 day |
| SRR6782094 | treatment | rosiglitazone (1 microM) | -24 hr | 0 hr | 1 day |
| SRR6782095 | treatment | rosiglitazone (1 microM) | -24 hr | 0 hr | 1 day |
| SRR6782096 | vehicle | DMSO | -24 hr | 0 hr | 1 day |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR6782092 | 50 | 147,467,903 | 0.65278 | 0.3836 | 1.8414 | 0.56625 | 3 | 2 |
| SRR6782093 | 100 | 54,599,436 | 0.45503 | 0.3222 | 1.41942 | 0.62692 | 1 | 2 |
| SRR6782094 | 100 | 65,118,397 | 0.52124 | 0.2596 | 1.35868 | 0.56416 | 2 | 1 |
| SRR6782095 | 50 | 26,342,603 | 0.45261 | 0.4846 | 3.26246 | 0.58604 | 2 | 2 |
| SRR6782096 | 50 | 61,657,098 | 0.62412 | 0.2907 | 2.1227 | 0.4196 | 2 | 1 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR6782092 | 30640 | 7702 | 10737 | 9476 | 29233 | 6892 | 12254 | 8491 |
| SRR6782093 | 21870 | 5387 | 8619 | 6008 | 14657 | 4542 | 5364 | 3931 |
| SRR6782094 | 20048 | 5205 | 7639 | 5356 | 13249 | 4457 | 4664 | 3346 |
| SRR6782095 | 16370 | 4900 | 5948 | 3830 | 11431 | 4373 | 3657 | 2519 |
| SRR6782096 | 16026 | 4570 | 5913 | 4001 | 11161 | 4270 | 3525 | 2543 |
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