DBNascent | Samples

SRR3194602,SRR3194603,SRR3194604,...

**Downloads**
Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
ZIP archive	ZIP archive	ZIP archive	ZIP archive
For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

**Technical details**
Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR3194602	2002	Oittinen2017polycomb	GRO-seq	circularization	control	True	2	1
SRR3194603	2003	Oittinen2017polycomb	GRO-seq	circularization	control	False	1	1
SRR3194604	2004	Oittinen2017polycomb	GRO-seq	circularization	control	True	2	2
SRR3194605	2005	Oittinen2017polycomb	GRO-seq	circularization	control	False	3	2

**Cellular details**
Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR3194602	M. musculus	primary cell	intestinal organoid
SRR3194603	M. musculus	primary cell	intestinal organoid
SRR3194604	M. musculus	primary cell	intestinal organoid
SRR3194605	M. musculus	primary cell	intestinal organoid

**Conditions**
Sample name	Condition type	Treatment	Start time	End time	Duration
SRR3194602	no treatment		None	None	None
SRR3194603	treatment	enterocyte differentiation protocol	None	None	None
SRR3194604	no treatment		None	None	None
SRR3194605	treatment	enterocyte differentiation protocol	None	None	None

**Sample metrics**
Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR3194602	51	44,270,423	0.52475	0.8264	3.43001	0.54651	2	2
SRR3194603	51	45,220,733	0.49601	0.8238	3.44566	0.59203	1	2
SRR3194604	50	20,787,993	0.58152	0.7669	2.4797	0.43819	2	1
SRR3194605	50	12,896,470	0.79478	0.7884	2.88073	0.21098	3	1

**Bidirectionals**
Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR3194602	22862	8860	7501	4824	21330	6291	8071	4901
SRR3194603	22647	7583	7400	5769	22678	6368	8928	5539
SRR3194604	14852	5666	5052	2549	11227	5220	3058	1887
SRR3194605	5237	1286	2189	936	3046	1083	1222	598