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SRR8706163,SRR8706164,SRR8706165,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRR8706163 | 2139 | Santoriello2020rna | PRO-seq | not noted in GEO or publication | control | True | 2 | 1 |
| SRR8706164 | 2140 | Santoriello2020rna | PRO-seq | not noted in GEO or publication | control | True | 2 | 2 |
| SRR8706165 | 2141 | Santoriello2020rna | PRO-seq | not noted in GEO or publication | control | True | 2 | 3 |
| SRR8706166 | 2142 | Santoriello2020rna | PRO-seq | not noted in GEO or publication | experimental | False | 2 | 1 |
| SRR8706167 | 2143 | Santoriello2020rna | PRO-seq | not noted in GEO or publication | experimental | False | 3 | 2 |
| SRR8706168 | 2144 | Santoriello2020rna | PRO-seq | not noted in GEO or publication | experimental | False | 3 | 3 |
| SRR8706169 | 2145 | Santoriello2020rna | PRO-seq | not noted in GEO or publication | experimental | False | 3 | 1 |
| SRR8706170 | 2146 | Santoriello2020rna | PRO-seq | not noted in GEO or publication | experimental | False | 2 | 2 |
| SRR8706171 | 2147 | Santoriello2020rna | PRO-seq | not noted in GEO or publication | experimental | False | 3 | 3 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR8706163 | H. sapiens | cell line | A375 | ||||
| SRR8706164 | H. sapiens | cell line | A375 | ||||
| SRR8706165 | H. sapiens | cell line | A375 | ||||
| SRR8706166 | H. sapiens | cell line | A375 | ||||
| SRR8706167 | H. sapiens | cell line | A375 | ||||
| SRR8706168 | H. sapiens | cell line | A375 | ||||
| SRR8706169 | H. sapiens | cell line | A375 | ||||
| SRR8706170 | H. sapiens | cell line | A375 | ||||
| SRR8706171 | H. sapiens | cell line | A375 |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR8706163 | vehicle | DMSO | -24 hr | 0 hr | 1 day |
| SRR8706164 | vehicle | DMSO | -24 hr | 0 hr | 1 day |
| SRR8706165 | vehicle | DMSO | -24 hr | 0 hr | 1 day |
| SRR8706166 | treatment | A771726 (25 microM) | -24 hr | 0 hr | 1 day |
| SRR8706167 | treatment | A771726 (25 microM) | -24 hr | 0 hr | 1 day |
| SRR8706168 | treatment | A771726 (25 microM) | -24 hr | 0 hr | 1 day |
| SRR8706169 | treatment | A771726 (25 microM) | -24 hr | 0 hr | 1 day |
| treatment | nucleotides | -24 hr | 0 hr | 1 day | |
| SRR8706170 | treatment | A771726 (25 microM) | -24 hr | 0 hr | 1 day |
| treatment | nucleotides | -24 hr | 0 hr | 1 day | |
| SRR8706171 | treatment | A771726 (25 microM) | -24 hr | 0 hr | 1 day |
| treatment | nucleotides | -24 hr | 0 hr | 1 day |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR8706163 | 42 | 18,500,442 | 0.13352 | 0.751 | 4.89232 | 0.79489 | 2 | 2 |
| SRR8706164 | 42 | 16,476,297 | 0.18491 | 0.743 | 5.88586 | 0.72254 | 2 | 3 |
| SRR8706165 | 42 | 17,982,977 | 0.17744 | 0.7411 | 5.76319 | 0.73372 | 2 | 3 |
| SRR8706166 | 42 | 17,945,347 | 0.1658 | 0.7584 | 4.36947 | 0.74686 | 2 | 2 |
| SRR8706167 | 42 | 15,921,189 | 0.17813 | 0.7357 | 4.87291 | 0.71726 | 3 | 2 |
| SRR8706168 | 42 | 14,465,605 | 0.18637 | 0.7517 | 4.66573 | 0.69461 | 3 | 2 |
| SRR8706169 | 42 | 14,345,527 | 0.16216 | 0.7115 | 4.86927 | 0.74993 | 3 | 2 |
| SRR8706170 | 42 | 19,942,369 | 0.18802 | 0.7292 | 5.57959 | 0.73694 | 2 | 3 |
| SRR8706171 | 42 | 13,123,035 | 0.21936 | 0.7068 | 5.44276 | 0.67027 | 3 | 3 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR8706163 | 32674 | 11082 | 13337 | 8329 | 22617 | 8502 | 8289 | 5324 |
| SRR8706164 | 33358 | 10771 | 13752 | 8589 | 23385 | 8900 | 8648 | 5485 |
| SRR8706165 | 34296 | 10663 | 14543 | 8865 | 23977 | 8652 | 9292 | 5625 |
| SRR8706166 | 34591 | 10961 | 14301 | 9303 | 23279 | 9107 | 8379 | 5825 |
| SRR8706167 | 34797 | 10629 | 14443 | 9668 | 24123 | 9472 | 8788 | 5999 |
| SRR8706168 | 32360 | 9857 | 13561 | 8788 | 22067 | 8887 | 8023 | 5298 |
| SRR8706169 | 26834 | 9890 | 10988 | 5917 | 18205 | 8090 | 6261 | 3741 |
| SRR8706170 | 35924 | 11567 | 14781 | 9532 | 25211 | 9063 | 9500 | 6159 |
| SRR8706171 | 27150 | 9232 | 11551 | 6261 | 19036 | 8331 | 6800 | 3930 |
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