DBNascent | Samples

SRR1219737,SRR574824,SRR574825,...

**Downloads**
Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
ZIP archive	ZIP archive	ZIP archive	ZIP archive
For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

**Technical details**
Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR1219737	2290	Sigova2013divergent	GRO-seq	ligation	experimental	False	1	1
SRR574824	2291	Sigova2013divergent	GRO-seq	ligation	control	True	2	1
SRR574825	2292	Sigova2013divergent	GRO-seq	ligation	control	True	3	2
SRR574826	2293	Sigova2013divergent	GRO-seq	ligation	control	True	1	3
SRR574827	2294	Sigova2013divergent	GRO-seq	ligation	experimental	False	1	1
SRR574828	2295	Sigova2013divergent	GRO-seq	ligation	experimental	False	2	2
SRR574829	2296	Sigova2013divergent	GRO-seq	ligation	experimental	False	1	1
SRR574830	2297	Sigova2013divergent	GRO-seq	ligation	experimental	False	1	2
SRR574831	2298	Sigova2013divergent	GRO-seq	ligation	experimental	False	1	2

**Cellular details**
Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR1219737	H. sapiens	cell line	ESC	H1
SRR574824	H. sapiens	cell line	ESC	H1
SRR574825	H. sapiens	cell line	ESC	H1
SRR574826	H. sapiens	cell line	ESC	H1
SRR574827	H. sapiens	cell line	ESC	H1
SRR574828	H. sapiens	cell line	ESC	H1
SRR574829	H. sapiens	cell line	ESC	H1
SRR574830	H. sapiens	cell line	ESC	H1
SRR574831	H. sapiens	cell line	ESC	H1

**Conditions**
Sample name	Condition type	Treatment	Start time	End time	Duration
SRR1219737	treatment	RPMI/B27	-3 day	0 day	3 day
	treatment	activin (50 ng/mL)	-2 day	0 day	2 day
SRR574824	no treatment		None	None	None
SRR574825	no treatment		None	None	None
SRR574826	no treatment		None	None	None
SRR574827	treatment	RPMI/B27	-1 day	0 day	1 day
SRR574828	treatment	RPMI/B27	-1 day	0 day	1 day
SRR574829	treatment	RPMI/B27	-25 hr	0 hr	25 hr
	treatment	activin (50 ng/mL)	-1 hr	0 hr	1 hr
SRR574830	treatment	RPMI/B27	-25 hr	0 hr	25 hr
	treatment	activin (50 ng/mL)	-1 hr	0 hr	1 hr
SRR574831	treatment	RPMI/B27	-3 day	0 day	3 day
	treatment	activin (50 ng/mL)	-2 day	0 day	2 day

**Sample metrics**
Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR1219737	40	71,149,469	0.42781	0.4223	4.11759	0.68753	1	2
SRR574824	101	64,300,039	0.57286	0.8599	2.91182	0.68307	2	1
SRR574825	50	72,941,417	0.68585	0.6873	4.47584	0.60841	3	2
SRR574826	40	74,306,771	0.39619	0.2526	3.20123	0.67002	1	2
SRR574827	40	75,254,442	0.44561	0.3814	3.18453	0.62853	1	2
SRR574828	40	96,942,993	0.51279	0.4912	3.43901	0.59479	2	2
SRR574829	40	93,472,159	0.47381	0.455	3.46911	0.62293	1	2
SRR574830	40	113,896,447	0.48171	0.5016	3.10348	0.65346	1	2
SRR574831	40	63,315,302	0.41716	0.4898	4.24539	0.69857	1	2

**Bidirectionals**
Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR1219737	42733	16554	16603	8909	30304	10443	11088	7511
SRR574824	51369	14487	21263	13787	42444	11364	16212	13679
SRR574825	45349	16530	17731	9711	35955	10584	13167	9984
SRR574826	34776	12642	14089	6848	22942	9760	7713	4924
SRR574827	42877	15706	17271	8648	24621	8703	8955	5817
SRR574828	50889	17660	20337	11540	32072	8839	12199	9114
SRR574829	47862	17389	19144	10234	31561	8815	12026	8665
SRR574830	51195	17965	20649	11335	34533	8890	13522	9902
SRR574831	42843	16282	16734	9168	31053	10591	11571	7766