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SRR1275489,SRR1275490,SRR1275491,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRR1275489 | 2417 | Tan2016stress | GRO-seq | ligation | control | True | 4 | 1 |
| SRR1275490 | 2418 | Tan2016stress | GRO-seq | ligation | control | True | 4 | 2 |
| SRR1275491 | 2419 | Tan2016stress | GRO-seq | ligation | experimental | False | 4 | 1 |
| SRR1275492 | 2420 | Tan2016stress | GRO-seq | ligation | experimental | False | 4 | 2 |
| SRR1275493 | 2421 | Tan2016stress | GRO-seq | ligation | experimental | False | 5 | 1 |
| SRR1275494 | 2422 | Tan2016stress | GRO-seq | ligation | experimental | False | 5 | 2 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR1275489 | H. sapiens | cell line | A375 | ||||
| SRR1275490 | H. sapiens | cell line | A375 | ||||
| SRR1275491 | H. sapiens | cell line | A375 | ||||
| SRR1275492 | H. sapiens | cell line | A375 | ||||
| SRR1275493 | H. sapiens | cell line | A375 | ||||
| SRR1275494 | H. sapiens | cell line | A375 |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR1275489 | vehicle | DMSO | -2 day | 0 day | 2 day |
| SRR1275490 | vehicle | DMSO | -2 day | 0 day | 2 day |
| SRR1275491 | treatment | leflunomide (25 microM) | -2 day | 0 day | 2 day |
| SRR1275492 | treatment | leflunomide (25 microM) | -2 day | 0 day | 2 day |
| SRR1275493 | treatment | A771726 (25 microM) | -2 day | 0 day | 2 day |
| SRR1275494 | treatment | A771726 (25 microM) | -2 day | 0 day | 2 day |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR1275489 | 40 | 11,048,933 | 0.94838 | 0.9587 | 0.72549 | 0.05299 | 4 | 1 |
| SRR1275490 | 40 | 12,343,429 | 0.92933 | 0.9519 | 1.00862 | 0.07416 | 4 | 1 |
| SRR1275491 | 40 | 16,023,837 | 0.94036 | 0.9481 | 0.83226 | 0.06975 | 4 | 1 |
| SRR1275492 | 40 | 16,616,077 | 0.94839 | 0.9539 | 0.71975 | 0.06207 | 4 | 1 |
| SRR1275493 | 40 | 25,713,190 | 0.9643 | 0.9532 | 0.66949 | 0.05411 | 5 | 1 |
| SRR1275494 | 40 | 20,678,114 | 0.97308 | 0.9511 | 0.55249 | 0.04127 | 5 | 1 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR1275489 | 330 | 142 | 89 | 70 | 426 | 111 | 69 | 239 |
| SRR1275490 | 1222 | 618 | 382 | 188 | 713 | 331 | 126 | 267 |
| SRR1275491 | 1451 | 737 | 438 | 241 | 962 | 460 | 197 | 317 |
| SRR1275492 | 876 | 402 | 289 | 149 | 689 | 237 | 135 | 306 |
| SRR1275493 | 1150 | 546 | 329 | 206 | 900 | 363 | 183 | 354 |
| SRR1275494 | 280 | 109 | 55 | 92 | 491 | 108 | 88 | 279 |
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