Explore DBNascent | browse or search sample metadata

Downloads

Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
ZIP archive	ZIP archive	ZIP archive	ZIP archive
For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

Technical details

Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR7458428	2482	Tome2018single	PRO-cap variant	ligation	control	True	4	1
SRR7458429	2483	Tome2018single	PRO-cap variant	ligation	experimental	False	4	1
SRR7458416	2476	Tome2018single	PRO-cap variant	ligation	control	True	5	1
SRR7458417	2477	Tome2018single	PRO-cap variant	ligation	control	True	2	1
SRR7458418	2478	Tome2018single	PRO-cap variant	ligation	control	True	5	1
SRR7458425	2479	Tome2018single	PRO-cap variant	ligation	control	True	2	2
SRR7458426	2480	Tome2018single	PRO-cap variant	ligation	control	True	2	2
SRR7458427	2481	Tome2018single	PRO-cap variant	ligation	control	True	4	2
SRZ7458410	2484	Tome2018single	PRO-cap variant	ligation	control	True	5	1
SRZ7458412	2485	Tome2018single	PRO-cap variant	ligation	control	True	3	1
SRZ7458414	2486	Tome2018single	PRO-cap variant	ligation	control	True	5	1
SRZ7458419	2487	Tome2018single	PRO-cap variant	ligation	control	True	3	2
SRZ7458421	2488	Tome2018single	PRO-cap variant	ligation	control	True	1	2
SRZ7458423	2489	Tome2018single	PRO-cap variant	ligation	control	True	3	2

Cellular details

Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR7458428	M. musculus	cell line	MEF
SRR7458429	M. musculus	cell line	MEF
SRR7458416	H. sapiens	cell line	K562
SRR7458417	H. sapiens	cell line	K562
SRR7458418	H. sapiens	cell line	K562
SRR7458425	H. sapiens	cell line	K562
SRR7458426	H. sapiens	cell line	K562
SRR7458427	H. sapiens	cell line	K562
SRZ7458410	H. sapiens	cell line	K562
SRZ7458412	H. sapiens	cell line	K562
SRZ7458414	H. sapiens	cell line	K562
SRZ7458419	H. sapiens	cell line	K562
SRZ7458421	H. sapiens	cell line	K562
SRZ7458423	H. sapiens	cell line	K562

Conditions

Sample name	Condition type	Treatment	Start time	End time	Duration
SRR7458428	no treatment		None	None	None
SRR7458429	treatment	heat shock (42 Celsius)	-1 hr	0 hr	1 hr
SRR7458416	no treatment		None	None	None
SRR7458417	no treatment		None	None	None
SRR7458418	no treatment		None	None	None
SRR7458425	no treatment		None	None	None
SRR7458426	no treatment		None	None	None
SRR7458427	no treatment		None	None	None
SRZ7458410	no treatment		None	None	None
SRZ7458412	no treatment		None	None	None
SRZ7458414	no treatment		None	None	None
SRZ7458419	no treatment		None	None	None
SRZ7458421	no treatment		None	None	None
SRZ7458423	no treatment		None	None	None

Sample metrics

Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR7458428	76	32,149,274	0.88836	0.8844	13.41	0.22247	4	5
SRR7458429	76	37,395,382	0.88185	0.9016	12.7599	0.25034	4	5
SRR7458416	48	3,519,251	0.27582	0.6068	4.44355	0.45241	5	2
SRR7458417	48	19,127,819	0.18937	0.6968	2.97598	0.73419	2	1
SRR7458418	48	4,760,051	0.28464	0.5647	3.9521	0.4901	5	2
SRR7458425	48	22,167,343	0.46551	0.5915	11.3673	0.36693	2	5
SRR7458426	48	21,865,069	0.1726	0.693	2.83764	0.76638	2	1
SRR7458427	48	13,247,780	0.2828	0.591	4.68845	0.585	4	2
SRZ7458410	47	1,935,922	0.20102	0.636	4.45714	0.55796	5	2
SRZ7458412	47	11,289,773	0.13903	0.7268	2.96825	0.745	3	1
SRZ7458414	47	2,740,072	0.21626	0.5571	4.07609	0.57659	5	2
SRZ7458419	47	16,833,743	0.40807	0.6363	11.2404	0.39374	3	5
SRZ7458421	47	29,114,062	0.13419	0.7433	2.86387	0.79034	1	1
SRZ7458423	47	17,122,747	0.24523	0.6312	4.672	0.62909	3	2

Bidirectionals

Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR7458428	25687	9107	9418	5436	None	None	None	None
SRR7458429	31336	10477	12098	6834	None	None	None	None
SRR7458416	6392	3727	2116	655	None	None	None	None
SRR7458417	9788	4459	3861	1277	None	None	None	None
SRR7458418	4015	2053	1336	351	None	None	None	None
SRR7458425	27659	11972	10873	5735	None	None	None	None
SRR7458426	9863	4149	4019	1437	None	None	None	None
SRR7458427	15779	7824	6042	2221	None	None	None	None
SRZ7458410	4552	2972	1420	356	None	0	0	0
SRZ7458412	7122	3205	2819	905	None	0	0	0
SRZ7458414	2160	1121	673	202	None	0	0	0
SRZ7458419	27745	11876	10941	5892	None	None	None	None
SRZ7458421	12732	5772	5036	1807	None	None	None	None
SRZ7458423	19731	9464	7712	3190	None	None	None	None