DBNascent | Samples

SRR4454567,SRR4454568,SRR4454569,...

**Downloads**
Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
ZIP archive	ZIP archive	ZIP archive	ZIP archive
For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

**Technical details**
Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR4454567	2536	Vihervaara2017transcriptional	PRO-seq	ligation	control	True	2	1
SRR4454568	2537	Vihervaara2017transcriptional	PRO-seq	ligation	control	True	1	2
SRR4454569	2538	Vihervaara2017transcriptional	PRO-seq	ligation	experimental	False	2	1
SRR4454570	2539	Vihervaara2017transcriptional	PRO-seq	ligation	experimental	False	1	2

**Cellular details**
Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR4454567	H. sapiens	cell line	K562
SRR4454568	H. sapiens	cell line	K562
SRR4454569	H. sapiens	cell line	K562
SRR4454570	H. sapiens	cell line	K562

**Conditions**
Sample name	Condition type	Treatment	Start time	End time	Duration
SRR4454567	no treatment		None	None	None
SRR4454568	no treatment		None	None	None
SRR4454569	treatment	heat shock (42 Celsius)	-30 min	0 min	30 min
SRR4454570	treatment	heat shock (42 Celsius)	-30 min	0 min	30 min

**Sample metrics**
Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR4454567	32	98,057,531	0.52036	0.7123	4.17857	0.70383	2	2
SRR4454568	32	35,335,856	0.43549	0.738	4.13935	0.68108	1	2
SRR4454569	32	130,311,998	0.63485	0.6685	4.69309	0.5972	2	2
SRR4454570	32	33,373,631	0.4022	0.7235	3.90172	0.68931	1	2

**Bidirectionals**
Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR4454567	33880	16482	11158	6939	34752	7637	15078	10206
SRR4454568	26157	13671	9002	4078	19015	7684	6600	3849
SRR4454569	32982	15360	11398	6949	44342	9820	19840	13566
SRR4454570	23679	11287	8550	4464	21362	9105	7670	4612