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SRR7519708,SRR7519709,SRR7519710,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRR7519708 | 2574 | Viiri2019extensive | GRO-seq | circularization | control | True | 3 | 1 |
| SRR7519709 | 2575 | Viiri2019extensive | GRO-seq | circularization | control | True | 2 | 2 |
| SRR7519710 | 2576 | Viiri2019extensive | GRO-seq | circularization | experimental | False | 2 | 1 |
| SRR7519711 | 2577 | Viiri2019extensive | GRO-seq | circularization | experimental | False | 2 | 2 |
| SRR7519712 | 2578 | Viiri2019extensive | GRO-seq | circularization | experimental | False | 2 | 3 |
| SRR7519713 | 2579 | Viiri2019extensive | GRO-seq | circularization | experimental | False | 2 | 1 |
| SRR7519714 | 2580 | Viiri2019extensive | GRO-seq | circularization | experimental | False | 2 | 2 |
| SRR7519715 | 2581 | Viiri2019extensive | GRO-seq | circularization | experimental | False | 1 | 1 |
| SRR7519716 | 2582 | Viiri2019extensive | GRO-seq | circularization | experimental | False | 1 | 2 |
| SRR7519717 | 2583 | Viiri2019extensive | GRO-seq | circularization | experimental | False | 2 | 1 |
| SRR7519718 | 2584 | Viiri2019extensive | GRO-seq | circularization | experimental | False | 1 | 2 |
| SRR7519719 | 2585 | Viiri2019extensive | GRO-seq | circularization | control | True | 4 | 1 |
| SRR7519720 | 2586 | Viiri2019extensive | GRO-seq | circularization | control | True | 2 | 2 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR7519708 | H. sapiens | cell line | iPSC | UTA.11104.EURCC | |||
| SRR7519709 | H. sapiens | cell line | iPSC | UTA.11104.EURCC | |||
| SRR7519710 | H. sapiens | cell line | iPSC | UTA.11104.EURCC | |||
| SRR7519711 | H. sapiens | cell line | iPSC | UTA.11104.EURCC | |||
| SRR7519712 | H. sapiens | cell line | iPSC | UTA.11104.EURCC | |||
| SRR7519713 | H. sapiens | cell line | iPSC | UTA.10100.EURCC | |||
| SRR7519714 | H. sapiens | cell line | iPSC | UTA.10100.EURCC | |||
| SRR7519715 | H. sapiens | cell line | iPSC | UTA.11104.EURCC | |||
| SRR7519716 | H. sapiens | cell line | iPSC | UTA.11104.EURCC | |||
| SRR7519717 | H. sapiens | cell line | iPSC | UTA.11304.EURCC | |||
| SRR7519718 | H. sapiens | cell line | iPSC | UTA.11304.EURCC | |||
| SRR7519719 | H. sapiens | primary cell | hepatocyte | individual Hu8132 | |||
| SRR7519720 | H. sapiens | primary cell | hepatocyte | individual Hu8209 |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR7519708 | no treatment | None | None | None | |
| SRR7519709 | no treatment | None | None | None | |
| SRR7519710 | treatment | hepatocyte differentiation protocol 1 | None | None | None |
| SRR7519711 | treatment | hepatocyte differentiation protocol 1 | None | None | None |
| SRR7519712 | treatment | hepatocyte differentiation protocol 1 | None | None | None |
| SRR7519713 | treatment | hepatocyte differentiation protocol 2 | None | None | None |
| SRR7519714 | treatment | hepatocyte differentiation protocol 2 | None | None | None |
| SRR7519715 | treatment | hepatocyte differentiation protocol 2 | None | None | None |
| SRR7519716 | treatment | hepatocyte differentiation protocol 2 | None | None | None |
| SRR7519717 | treatment | hepatocyte differentiation protocol 2 | None | None | None |
| SRR7519718 | treatment | hepatocyte differentiation protocol 2 | None | None | None |
| SRR7519719 | no treatment | None | None | None | |
| SRR7519720 | no treatment | None | None | None |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR7519708 | 50 | 14,973,252 | 0.36202 | 0.9228 | 4.65487 | 0.65481 | 3 | 2 |
| SRR7519709 | 50 | 18,874,582 | 0.38833 | 0.9101 | 4.16787 | 0.63151 | 2 | 2 |
| SRR7519710 | 50 | 16,744,337 | 0.47792 | 0.9256 | 3.52484 | 0.53898 | 2 | 2 |
| SRR7519711 | 50 | 18,797,347 | 0.42129 | 0.8951 | 3.17199 | 0.59932 | 2 | 2 |
| SRR7519712 | 50 | 19,457,307 | 0.42724 | 0.9166 | 3.50086 | 0.59832 | 2 | 2 |
| SRR7519713 | 51 | 17,236,543 | 0.46239 | 0.918 | 1.6747 | 0.64805 | 2 | 1 |
| SRR7519714 | 51 | 22,098,398 | 0.55269 | 0.8909 | 1.78319 | 0.61732 | 2 | 1 |
| SRR7519715 | 51 | 25,137,303 | 0.41269 | 0.8961 | 2.00963 | 0.74042 | 1 | 1 |
| SRR7519716 | 51 | 31,609,821 | 0.31668 | 0.926 | 1.89033 | 0.83142 | 1 | 1 |
| SRR7519717 | 51 | 24,728,221 | 0.52746 | 0.9267 | 2.06064 | 0.60661 | 2 | 1 |
| SRR7519718 | 51 | 29,055,869 | 0.38663 | 0.9206 | 2.0327 | 0.75505 | 1 | 1 |
| SRR7519719 | 50 | 15,424,607 | 0.82286 | 0.8839 | 2.87143 | 0.18246 | 4 | 1 |
| SRR7519720 | 50 | 31,675,744 | 0.61578 | 0.9121 | 2.54462 | 0.43522 | 2 | 1 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR7519708 | 12591 | 4827 | 5233 | 1865 | 9580 | 4682 | 3065 | 2007 |
| SRR7519709 | 17630 | 7250 | 7327 | 2580 | 12971 | 6331 | 4534 | 2179 |
| SRR7519710 | 19868 | 8074 | 8560 | 2970 | 11372 | 5757 | 4264 | 1518 |
| SRR7519711 | 20827 | 7968 | 8992 | 3468 | 11894 | 5561 | 4568 | 1908 |
| SRR7519712 | 23210 | 8833 | 9971 | 4127 | 13078 | 5967 | 5151 | 2169 |
| SRR7519713 | 9408 | 2677 | 4261 | 1858 | 6581 | 2851 | 2637 | 1219 |
| SRR7519714 | 11276 | 3522 | 4815 | 2322 | 8298 | 3852 | 3242 | 1423 |
| SRR7519715 | 14390 | 4777 | 6216 | 2932 | 12070 | 5243 | 4911 | 2051 |
| SRR7519716 | 16811 | 4968 | 7398 | 3910 | 15331 | 5408 | 6759 | 3158 |
| SRR7519717 | 17084 | 6254 | 6984 | 3444 | 14257 | 6645 | 5399 | 2419 |
| SRR7519718 | 18981 | 6502 | 8105 | 4180 | 17359 | 6846 | 7305 | 3358 |
| SRR7519719 | 9380 | 4395 | 3901 | 821 | 4589 | 2914 | 1451 | 463 |
| SRR7519720 | 24979 | 8409 | 11114 | 5072 | 17992 | 7482 | 7658 | 3220 |
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