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SRR1145801,SRR1145808,SRR1145815,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRR1145801 | 2598 | Wang2015epigenetic | GRO-seq | circularization | control | True | 2 | 1 |
| SRR1145808 | 2599 | Wang2015epigenetic | GRO-seq | circularization | control | False | 2 | 1 |
| SRR1145815 | 2600 | Wang2015epigenetic | GRO-seq | circularization | control | False | 3 | 1 |
| SRR1145822 | 2601 | Wang2015epigenetic | GRO-seq | circularization | control | False | 2 | 1 |
| SRR1145829 | 2602 | Wang2015epigenetic | GRO-seq | circularization | control | False | 2 | 1 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR1145801 | H. sapiens | cell line | ESC | CyT49 | |||
| SRR1145808 | H. sapiens | cell line | ESC | CyT49 | |||
| SRR1145815 | H. sapiens | cell line | ESC | CyT49 | |||
| SRR1145822 | H. sapiens | cell line | ESC | CyT49 | |||
| SRR1145829 | H. sapiens | cell line | ESC | CyT49 |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR1145801 | no treatment | None | None | None | |
| SRR1145808 | treatment | pancreatic differentiation protocol | -2 day | 0 day | 2 day |
| SRR1145815 | treatment | pancreatic differentiation protocol | -5 day | 0 day | 5 day |
| SRR1145822 | treatment | pancreatic differentiation protocol | -7 day | 0 day | 7 day |
| SRR1145829 | treatment | pancreatic differentiation protocol | -10 day | 0 day | 10 day |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR1145801 | 50 | 243,503,915 | 0.54544 | 0.7543 | 3.04906 | 0.59075 | 2 | 2 |
| SRR1145808 | 50 | 178,215,723 | 0.54778 | 0.5804 | 2.24992 | 0.6172 | 2 | 1 |
| SRR1145815 | 50 | 50,596,975 | 0.68993 | 0.7223 | 5.03267 | 0.33974 | 3 | 3 |
| SRR1145822 | 50 | 51,566,093 | 0.60169 | 0.7443 | 3.8559 | 0.42733 | 2 | 2 |
| SRR1145829 | 50 | 48,630,784 | 0.57313 | 0.7724 | 3.558 | 0.46206 | 2 | 2 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR1145801 | 60331 | 17523 | 21017 | 21378 | 67371 | 10324 | 28729 | 25613 |
| SRR1145808 | 38315 | 14137 | 13413 | 11058 | 42204 | 10559 | 17347 | 13803 |
| SRR1145815 | 15928 | 7140 | 6520 | 1431 | 12297 | 7063 | 4039 | 1314 |
| SRR1145822 | 20043 | 8214 | 8470 | 2745 | 14839 | 7232 | 5528 | 2094 |
| SRR1145829 | 15148 | 6672 | 6324 | 1263 | 10987 | 6100 | 3740 | 1105 |
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