DBNascent | Samples

SRR4842300,SRR4842301,SRR4842302,...

**Downloads**
Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
ZIP archive	ZIP archive	ZIP archive	ZIP archive
For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

**Technical details**
Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR4842300	2623	Wang2017cell	GRO-seq	circularization	control	True	4	1
SRR4842301	2624	Wang2017cell	GRO-seq	circularization	control	True	4	2
SRR4842302	2625	Wang2017cell	GRO-seq	circularization	experimental	False	4	1
SRR4842303	2626	Wang2017cell	GRO-seq	circularization	experimental	False	4	2

**Cellular details**
Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR4842300	M. musculus	primary cell	splenic B cell
SRR4842301	M. musculus	primary cell	splenic B cell
SRR4842302	M. musculus	primary cell	splenic B cell			Fucci-EGFP+ (stable)
SRR4842303	M. musculus	primary cell	splenic B cell			Fucci-EGFP+ (stable)

**Conditions**
Sample name	Condition type	Treatment	Start time	End time	Duration
SRR4842300	no treatment		None	None	None
SRR4842301	no treatment		None	None	None
SRR4842302	treatment	cell sorting EGFP+	-210 min	-150 min	1 hr
	treatment	cell sorting EGFP-	-60 min	0 min	1 hr
	treatment	nocodazole (100 ng/mL)	-570 min	-210 min	6 hr
SRR4842303	treatment	cell sorting EGFP+	-210 min	-150 min	1 hr
	treatment	cell sorting EGFP-	-60 min	0 min	1 hr
	treatment	nocodazole (100 ng/mL)	-570 min	-210 min	6 hr

**Sample metrics**
Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR4842300	50	190,000,092	0.81373	0.765	2.60642	0.49203	4	1
SRR4842301	50	197,669,475	0.82985	0.7871	3.49435	0.47046	4	2
SRR4842302	50	185,457,316	0.85364	0.7473	2.19055	0.31096	4	1
SRR4842303	50	160,487,189	0.84305	0.7987	3.12564	0.44217	4	2

**Bidirectionals**
Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR4842300	26799	9819	8626	6337	31520	6429	13969	8633
SRR4842301	23779	9251	7960	5082	28149	7042	12018	7198
SRR4842302	29007	9095	10833	6667	29941	6750	13327	7857
SRR4842303	19292	7011	7285	3249	20881	5421	9079	4586