Explore DBNascent | browse or search sample metadata
Search
All Samples
Samples By Dataset
Advanced Search
Sample Details
SRR3535362,SRR3535363,SRR3535364,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | QC score | Replicate | Outlier? |
| SRR3535362 | 2733 | Yang2017glucocorticoid | GRO-seq | circularization | experimental | 1 | 1 | No |
| SRR3535363 | 2734 | Yang2017glucocorticoid | GRO-seq | circularization | experimental | 2 | 1 | No |
| SRR3535364 | 2735 | Yang2017glucocorticoid | GRO-seq | circularization | experimental | 2 | 1 | No |
| SRR3535365 | 2736 | Yang2017glucocorticoid | GRO-seq | circularization | experimental | 3 | 1 | No |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR3535362 | H. sapiens | cell line | MCF7 | ||||
| SRR3535363 | H. sapiens | cell line | MCF7 | ||||
| SRR3535364 | H. sapiens | cell line | MCF7 | ||||
| SRR3535365 | H. sapiens | cell line | MCF7 |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR3535362 | treatment | ICI 182,780 (100 nM) | -3 hr | 0 hr | 3 hr |
| SRR3535363 | treatment | ICI 182,780 (100 nM) | -3 hr | 0 hr | 3 hr |
| treatment | dexamethasone (100 nM) | -1 hr | 0 hr | 1 hr | |
| SRR3535364 | treatment | 17-beta-estradiol (100 nM) | -1 hr | 0 hr | 1 hr |
| SRR3535365 | treatment | 17-beta-estradiol (100 nM) | -1 hr | 0 hr | 1 hr |
| treatment | dexamethasone (100 nM) | -1 hr | 0 hr | 1 hr |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR3535362 | 50 | 40,054,831 | 0.49531 | 0.9237 | 2.63085 | 0.55169 | 1 | 1 |
| SRR3535363 | 50 | 37,639,224 | 0.54678 | 0.9309 | 2.96645 | 0.48956 | 2 | 1 |
| SRR3535364 | 50 | 42,806,678 | 0.50412 | 0.9348 | 2.86812 | 0.54241 | 2 | 1 |
| SRR3535365 | 50 | 34,359,854 | 0.65975 | 0.9527 | 3.48921 | 0.36145 | 3 | 2 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR3535362 | 22828 | 9578 | 8995 | 4254 | 18956 | 7895 | 7593 | 3689 |
| SRR3535363 | 22032 | 9202 | 8858 | 4054 | 18605 | 7868 | 7483 | 3500 |
| SRR3535364 | 24010 | 10094 | 9261 | 4706 | 20595 | 8163 | 8530 | 4063 |
| SRR3535365 | 13950 | 6395 | 5374 | 1669 | 10525 | 5600 | 3561 | 1508 |
Top