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SRR8950256,SRR8950257,SRR8950259,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRR8950256 | 2782 | Zhang2019fundamental | GRO-seq | ligation | control | False | 3 | 1 |
| SRR8950257 | 2783 | Zhang2019fundamental | GRO-seq | ligation | control | False | 2 | 2 |
| SRR8950259 | 2784 | Zhang2019fundamental | GRO-seq | ligation | experimental | False | 1 | 1 |
| SRR8950260 | 2785 | Zhang2019fundamental | GRO-seq | ligation | experimental | False | 3 | 2 |
| SRR8950261 | 2786 | Zhang2019fundamental | GRO-seq | ligation | experimental | False | 1 | 3 |
| SRR8950265 | 2787 | Zhang2019fundamental | GRO-seq | ligation | control | False | 1 | 1 |
| SRR8950266 | 2788 | Zhang2019fundamental | GRO-seq | ligation | control | False | 1 | 2 |
| SRR8950267 | 2789 | Zhang2019fundamental | GRO-seq | ligation | control | False | 1 | 3 |
| SRR8950268 | 2790 | Zhang2019fundamental | GRO-seq | ligation | experimental | False | 1 | 1 |
| SRR8950269 | 2791 | Zhang2019fundamental | GRO-seq | ligation | experimental | False | 1 | 2 |
| SRR8950270 | 2792 | Zhang2019fundamental | GRO-seq | ligation | experimental | False | 2 | 3 |
| SRR8950272 | 2793 | Zhang2019fundamental | GRO-seq | ligation | experimental | False | 1 | 1 |
| SRR8950273 | 2794 | Zhang2019fundamental | GRO-seq | ligation | experimental | False | 1 | 2 |
| SRR8950277 | 2795 | Zhang2019fundamental | GRO-seq | ligation | experimental | False | 1 | 1 |
| SRR8950278 | 2796 | Zhang2019fundamental | GRO-seq | ligation | experimental | False | 1 | 2 |
| SRR8950279 | 2797 | Zhang2019fundamental | GRO-seq | ligation | experimental | False | 3 | 3 |
| SRR9961457 | 2798 | Zhang2019fundamental | GRO-seq | ligation | control | False | 4 | 3 |
| SRR9961458 | 2799 | Zhang2019fundamental | GRO-seq | ligation | experimental | False | 1 | 1 |
| SRR9961459 | 2800 | Zhang2019fundamental | GRO-seq | ligation | experimental | False | 2 | 2 |
| SRR9961460 | 2801 | Zhang2019fundamental | GRO-seq | ligation | experimental | False | 2 | 3 |
| SRR9961461 | 2802 | Zhang2019fundamental | GRO-seq | ligation | experimental | False | 2 | 3 |
| SRR9961462 | 2803 | Zhang2019fundamental | GRO-seq | ligation | experimental | False | 3 | 4 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR8950256 | M. musculus | primary cell | splenic B cell | C57BL/6 | Aid -/- | ||
| SRR8950257 | M. musculus | primary cell | splenic B cell | C57BL/6 | Aid -/- | ||
| SRR8950259 | M. musculus | primary cell | splenic B cell | C57BL/6 | Aid -/- | ||
| SRR8950260 | M. musculus | primary cell | splenic B cell | C57BL/6 | Aid -/- | ||
| SRR8950261 | M. musculus | primary cell | splenic B cell | C57BL/6 | Aid -/- | ||
| SRR8950265 | M. musculus | cell line | CH12F3 | CH +/-; Aid -/- | |||
| SRR8950266 | M. musculus | cell line | CH12F3 | CH +/-; Aid -/- | |||
| SRR8950267 | M. musculus | cell line | CH12F3 | CH +/-; Aid -/- | |||
| SRR8950268 | M. musculus | cell line | CH12F3 | CH +/-; Aid -/- | |||
| SRR8950269 | M. musculus | cell line | CH12F3 | CH +/-; Aid -/- | |||
| SRR8950270 | M. musculus | cell line | CH12F3 | CH +/-; Aid -/- | |||
| SRR8950272 | M. musculus | cell line | CH12F3 | CH +/-; Aid -/-; I-alpha -/- | |||
| SRR8950273 | M. musculus | cell line | CH12F3 | CH +/-; Aid -/-; I-alpha -/- | |||
| SRR8950277 | M. musculus | cell line | CH12F3 | CH +/-; Aid -/-; I-alpha -/-; 3xCTCF-binding element knock-in | |||
| SRR8950278 | M. musculus | cell line | CH12F3 | CH +/-; Aid -/-; I-alpha -/-; 3xCTCF-binding element knock-in | |||
| SRR8950279 | M. musculus | cell line | CH12F3 | CH +/-; Aid -/-; I-alpha -/-; 3xCTCF-binding element knock-in | |||
| SRR9961457 | M. musculus | primary cell | splenic B cell | C57BL/6 | Aid -/- | ||
| SRR9961458 | M. musculus | cell line | CH12F3 | CH +/-; Aid -/-; I-alpha -/- | |||
| SRR9961459 | M. musculus | cell line | CH12F3 | CH +/-; Aid -/-; I-alpha -/- | |||
| SRR9961460 | M. musculus | cell line | CH12F3 | CH +/-; Aid -/-; I-alpha -/- | |||
| SRR9961461 | M. musculus | cell line | CH12F3 | CH +/-; Aid -/-; I-alpha -/- | |||
| SRR9961462 | M. musculus | cell line | CH12F3 | CH +/-; Aid -/-; I-alpha -/- |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR8950256 | no treatment | None | None | None | |
| SRR8950257 | no treatment | None | None | None | |
| SRR8950259 | treatment | anti-CD40 (1 microg/mL) | -48 hr | 0 hr | 2 day |
| treatment | interleukin-4 (20 ng/mL) | -48 hr | 0 hr | 2 day | |
| SRR8950260 | treatment | anti-CD40 (1 microg/mL) | -48 hr | 0 hr | 2 day |
| treatment | interleukin-4 (20 ng/mL) | -48 hr | 0 hr | 2 day | |
| SRR8950261 | treatment | anti-CD40 (1 microg/mL) | -48 hr | 0 hr | 2 day |
| treatment | interleukin-4 (20 ng/mL) | -48 hr | 0 hr | 2 day | |
| SRR8950265 | no treatment | None | None | None | |
| SRR8950266 | no treatment | None | None | None | |
| SRR8950267 | no treatment | None | None | None | |
| SRR8950268 | treatment | TGF-beta (0.5 ng/mL) | -24 hr | 0 hr | 1 day |
| treatment | anti-CD40 (1 microg/mL) | -24 hr | 0 hr | 1 day | |
| treatment | interleukin-4 (20 ng/mL) | -24 hr | 0 hr | 1 day | |
| SRR8950269 | treatment | TGF-beta (0.5 ng/mL) | -24 hr | 0 hr | 1 day |
| treatment | anti-CD40 (1 microg/mL) | -24 hr | 0 hr | 1 day | |
| treatment | interleukin-4 (20 ng/mL) | -24 hr | 0 hr | 1 day | |
| SRR8950270 | treatment | TGF-beta (0.5 ng/mL) | -24 hr | 0 hr | 1 day |
| treatment | anti-CD40 (1 microg/mL) | -24 hr | 0 hr | 1 day | |
| treatment | interleukin-4 (20 ng/mL) | -24 hr | 0 hr | 1 day | |
| SRR8950272 | treatment | TGF-beta (0.5 ng/mL) | -24 hr | 0 hr | 1 day |
| treatment | anti-CD40 (1 microg/mL) | -24 hr | 0 hr | 1 day | |
| treatment | interleukin-4 (20 ng/mL) | -24 hr | 0 hr | 1 day | |
| SRR8950273 | treatment | TGF-beta (0.5 ng/mL) | -24 hr | 0 hr | 1 day |
| treatment | anti-CD40 (1 microg/mL) | -24 hr | 0 hr | 1 day | |
| treatment | interleukin-4 (20 ng/mL) | -24 hr | 0 hr | 1 day | |
| SRR8950277 | treatment | TGF-beta (0.5 ng/mL) | -24 hr | 0 hr | 1 day |
| treatment | anti-CD40 (1 microg/mL) | -24 hr | 0 hr | 1 day | |
| treatment | interleukin-4 (20 ng/mL) | -24 hr | 0 hr | 1 day | |
| SRR8950278 | treatment | TGF-beta (0.5 ng/mL) | -24 hr | 0 hr | 1 day |
| treatment | anti-CD40 (1 microg/mL) | -24 hr | 0 hr | 1 day | |
| treatment | interleukin-4 (20 ng/mL) | -24 hr | 0 hr | 1 day | |
| SRR8950279 | treatment | TGF-beta (0.5 ng/mL) | -24 hr | 0 hr | 1 day |
| treatment | anti-CD40 (1 microg/mL) | -24 hr | 0 hr | 1 day | |
| treatment | interleukin-4 (20 ng/mL) | -24 hr | 0 hr | 1 day | |
| SRR9961457 | no treatment | None | None | None | |
| SRR9961458 | no treatment | None | None | None | |
| SRR9961459 | no treatment | None | None | None | |
| SRR9961460 | no treatment | None | None | None | |
| SRR9961461 | treatment | TGF-beta (0.5 ng/mL) | -24 hr | 0 hr | 1 day |
| treatment | anti-CD40 (1 microg/mL) | -24 hr | 0 hr | 1 day | |
| treatment | interleukin-4 (20 ng/mL) | -24 hr | 0 hr | 1 day | |
| SRR9961462 | treatment | TGF-beta (0.5 ng/mL) | -24 hr | 0 hr | 1 day |
| treatment | anti-CD40 (1 microg/mL) | -24 hr | 0 hr | 1 day | |
| treatment | interleukin-4 (20 ng/mL) | -24 hr | 0 hr | 1 day |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR8950256 | 76 | 24,748,052 | 0.71986 | 0.8082 | 1.78475 | 0.38503 | 3 | 1 |
| SRR8950257 | 76 | 35,567,456 | 0.55189 | 0.7881 | 1.88646 | 0.57121 | 2 | 1 |
| SRR8950259 | 76 | 51,680,898 | 0.43109 | 0.6969 | 2.45807 | 0.60543 | 1 | 1 |
| SRR8950260 | 76 | 85,406,640 | 0.69375 | 0.6969 | 2.59249 | 0.53938 | 3 | 1 |
| SRR8950261 | 76 | 40,057,615 | 0.2612 | 0.8189 | 1.82914 | 0.69611 | 1 | 1 |
| SRR8950265 | 76 | 20,673,943 | 0.20788 | 0.8259 | 1.67256 | 0.68417 | 1 | 1 |
| SRR8950266 | 76 | 46,112,580 | 0.43384 | 0.8134 | 1.64632 | 0.64391 | 1 | 1 |
| SRR8950267 | 76 | 31,078,408 | 0.33852 | 0.812 | 1.63422 | 0.65297 | 1 | 1 |
| SRR8950268 | 76 | 30,959,783 | 0.29161 | 0.8315 | 1.73005 | 0.6785 | 1 | 1 |
| SRR8950269 | 76 | 29,270,569 | 0.40716 | 0.8146 | 1.70968 | 0.62513 | 1 | 1 |
| SRR8950270 | 76 | 79,202,179 | 0.5938 | 0.8214 | 1.72237 | 0.6419 | 2 | 1 |
| SRR8950272 | 76 | 37,902,237 | 0.25882 | 0.8239 | 1.81821 | 0.70574 | 1 | 1 |
| SRR8950273 | 76 | 48,236,979 | 0.4125 | 0.8059 | 1.83249 | 0.66779 | 1 | 1 |
| SRR8950277 | 76 | 39,332,218 | 0.28245 | 0.8326 | 1.72644 | 0.69811 | 1 | 1 |
| SRR8950278 | 76 | 38,798,684 | 0.41322 | 0.8189 | 1.70784 | 0.64842 | 1 | 1 |
| SRR8950279 | 76 | 38,213,662 | 0.67 | 0.6406 | 2.02066 | 0.44325 | 3 | 1 |
| SRR9961457 | 76 | 20,024,519 | 0.80789 | 0.8055 | 1.8956 | 0.25678 | 4 | 1 |
| SRR9961458 | 76 | 32,112,303 | 0.38911 | 0.7628 | 1.68223 | 0.62506 | 1 | 1 |
| SRR9961459 | 76 | 29,738,744 | 0.5434 | 0.7631 | 1.69832 | 0.53891 | 2 | 1 |
| SRR9961460 | 76 | 28,029,765 | 0.50378 | 0.8021 | 1.62401 | 0.66429 | 2 | 3 |
| SRR9961461 | 76 | 17,747,958 | 0.20998 | 0.8546 | 1.74226 | 0.75642 | 2 | 3 |
| SRR9961462 | 76 | 15,371,526 | 0.61307 | 0.6867 | 1.9715 | 0.36487 | 3 | 1 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR8950256 | 18487 | 4989 | 8099 | 2885 | 9734 | 3013 | 3794 | 1857 |
| SRR8950257 | 26625 | 7323 | 11224 | 4351 | 15773 | 4366 | 6088 | 3284 |
| SRR8950259 | 30789 | 8270 | 12326 | 5686 | 20332 | 4666 | 8222 | 4602 |
| SRR8950260 | 26881 | 7546 | 10651 | 4755 | 19792 | 4686 | 7883 | 4355 |
| SRR8950261 | 30644 | 7706 | 13275 | 5998 | 21230 | 4711 | 9275 | 5055 |
| SRR8950265 | 37731 | 8223 | 15994 | 9040 | 19133 | 4592 | 7603 | 5205 |
| SRR8950266 | 39721 | 8092 | 16901 | 10100 | 25280 | 5131 | 10546 | 7412 |
| SRR8950267 | 39266 | 8372 | 16725 | 9596 | 22058 | 4889 | 9017 | 6193 |
| SRR8950268 | 44852 | 8826 | 19028 | 11763 | 25422 | 5200 | 10587 | 7377 |
| SRR8950269 | 41505 | 8331 | 17882 | 10274 | 22421 | 4961 | 9233 | 6289 |
| SRR8950270 | 43192 | 7955 | 17982 | 12242 | 31312 | 5509 | 13390 | 9700 |
| SRR8950272 | 40150 | 8374 | 16472 | 10233 | 25487 | 5098 | 10580 | 7352 |
| SRR8950273 | 38734 | 8147 | 16011 | 9775 | 25774 | 5148 | 10746 | 7495 |
| SRR8950277 | 42460 | 8296 | 17767 | 11411 | 27708 | 5318 | 11767 | 8290 |
| SRR8950278 | 40325 | 8002 | 17132 | 10502 | 25223 | 5181 | 10541 | 7336 |
| SRR8950279 | 25560 | 6318 | 10761 | 5154 | 14966 | 4044 | 5310 | 3837 |
| SRR9961457 | 12729 | 3502 | 5502 | 1827 | 6124 | 2069 | 2321 | 1128 |
| SRR9961458 | 34588 | 7648 | 15016 | 7840 | 18478 | 4397 | 7287 | 4998 |
| SRR9961459 | 29497 | 6728 | 13074 | 6247 | 15122 | 3967 | 5887 | 3962 |
| SRR9961460 | 44932 | 1440 | 29427 | 10693 | None | None | None | None |
| SRR9961461 | 46029 | 1510 | 29629 | 11402 | 0 | 0 | 0 | 0 |
| SRR9961462 | 19171 | 5336 | 7617 | 3268 | 8935 | 2950 | 3003 | 1873 |
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