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SRR5144955,SRR5144956,SRR5144957,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRR5144955 | 2850 | Zhu2017comprehensive | GRO-seq | circularization | control | False | 4 | 1 |
| SRR5144956 | 2851 | Zhu2017comprehensive | GRO-seq | circularization | control | False | 4 | 2 |
| SRR5144957 | 2852 | Zhu2017comprehensive | GRO-seq | circularization | control | True | 3 | 1 |
| SRR5144958 | 2853 | Zhu2017comprehensive | GRO-seq | circularization | control | True | 3 | 2 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR5144955 | M. musculus | cell line | ECOMG | ||||
| SRR5144956 | M. musculus | cell line | ECOMG | ||||
| SRR5144957 | M. musculus | cell line | ECOMG | ||||
| SRR5144958 | M. musculus | cell line | ECOMG |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR5144955 | treatment | 17-beta-estradiol withdrawal | -5 day | 0 day | 5 day |
| SRR5144956 | treatment | 17-beta-estradiol withdrawal | -5 day | 0 day | 5 day |
| SRR5144957 | no treatment | None | None | None | |
| SRR5144958 | no treatment | None | None | None |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR5144955 | 50 | 12,560,915 | 0.76894 | 0.6054 | 2.897 | 0.22728 | 4 | 2 |
| SRR5144956 | 50 | 37,889,429 | 0.86884 | 0.6871 | 2.51627 | 0.14165 | 4 | 1 |
| SRR5144957 | 50 | 12,952,709 | 0.60012 | 0.6232 | 4.85574 | 0.3929 | 3 | 2 |
| SRR5144958 | 50 | 33,766,468 | 0.65891 | 0.6833 | 3.77107 | 0.37092 | 3 | 2 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR5144955 | 2142 | 397 | 1028 | 178 | 919 | 180 | 336 | 314 |
| SRR5144956 | 4495 | 915 | 2321 | 308 | 1901 | 515 | 653 | 495 |
| SRR5144957 | 3646 | 687 | 1817 | 228 | 1954 | 404 | 613 | 746 |
| SRR5144958 | 6760 | 1791 | 3348 | 411 | 4886 | 1520 | 1519 | 1210 |
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