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Paper Details
Ba2020ctcf
| SRR10808263 |
| SRR10808264 |
| SRR10836717 |
| SRR10836718 |
| SRR10836719 |
| SRR10836720 |
| SRR10836721 |
| SRR10836722 |
| SRR10836723 |
| SRR10836724 |
| SRR10836725 |
| SRR10836726 |
| TDFs (visualization files) | Zip archive | 1.8 Gb |
| Read counts and bidirectional calls | Zip archive | 88 Mb |
| SRP accession | SRP239169 |
| GEO accession | GSE142780 |
| Protocol | GRO-seq |
| Organisms | M. musculus |
| Library Prep | ligation |
| Spike-in | |
| Published | Yes |
| Year | 2020 |
| First Author | Ba |
| Last Author | Alt |
| DOI | 10.1038/s41586-020-2578-0 |
| Full citation | Zhaoqing Ba, Jiangman Lou, Adam Yongxin Ye, Hai-Qiang Dai, Edward W. Dring, Sherry G. Lin, Suvi Jain, Nia Kyritsis, Kyong-Rim Kieffer-Kwon, Rafael Casellas, and Frederick W. Alt. CTCF orchestrates long-range cohesin-driven V(D)J recombinational scanning. Nature, 586(7828):305-310, Oct 2020. |
|
Median QC score
|
1.0 |
| ATAC-seq? | No |
| RNA-seq? | No |
| ChIP-seq? | Yes |
| 3D Seq? | Yes |
| Other Seq? | Yes |