Tan2016stress
Downloads (all samples in dataset)
All metadata TXT 9 Kb
TDFs (visualization files) ZIP archive 75 Mb
Read counts and bidirectional calls ZIP archive 42 Mb
Paper Details
SRP accession SRP041793
GEO accession GSE57430
Protocol GRO-seq
Organisms H. sapiens
Library Prep ligation
Spike-in
Published Yes
Year 2016
First Author Tan
Last Author Zon
DOI 10.1016/j.molcel.2016.03.013
Full citation Justin L. Tan, Rachel D. Fogley, Ryan A. Flynn, Julien Ablain, Song Yang, Violaine Saint-Andre, Zi Peng Fan, Brian T. Do, Alvaro C. Laga, Koh Fujinaga, Cristina Santoriello, Celeste B. Greer, Yoon Jung Kim, John G. Clohessy, Anne Bothmer, Nicole Pandell, Serine Avagyan, John E. Brogie, Ellen van Rooijen, Elliott J. Hagedorn, Ng Shyh-Chang, Richard M. White, David H. Price, Pier Paolo Pandolfi, B. Matija Peterlin, Yi Zhou, Tae Hoon Kim, John M. Asara, Howard Y. Chang, Richard A. Young, and Leonard I. Zon. Stress from nucleotide depletion activates the transcriptional regulator HEXIM1 to suppress melanoma. Molecular Cell, 62(1):34-46, Apr 2016.
Median QC score
Information
4.0
ATAC-seq? No
RNA-seq? Yes
ChIP-seq? Yes
3D Seq? No
Other Seq? Yes