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Paper Details
Viiri2019extensive
| SRR7519708 |
| SRR7519709 |
| SRR7519710 |
| SRR7519711 |
| SRR7519712 |
| SRR7519713 |
| SRR7519714 |
| SRR7519715 |
| SRR7519716 |
| SRR7519717 |
| SRR7519718 |
| SRR7519719 |
| SRR7519720 |
| TDFs (visualization files) | Zip archive | 958 Mb |
| Read counts and bidirectional calls | Zip archive | 105 Mb |
| SRP accession | SRP153391 |
| GEO accession | GSE117086 |
| Protocol | GRO-seq |
| Organisms | H. sapiens |
| Library Prep | circularization |
| Spike-in | |
| Published | Yes |
| Year | 2019 |
| First Author | Viiri |
| Last Author | Aalto-Setala |
| DOI | 10.1038/s41598-019-39215-0 |
| Full citation | Leena E. Viiri, Tommi Rantapero, Mostafa Kiamehr, Anna Alexanova, Mikko Oittinen, Keijo Viiri, Henri Niskanen, Matti Nykter, Minna U. Kaikkonen, and Katriina Aalto-Setala. Extensive reprogramming of the nascent transcriptome during iPSC to hepatocyte differentiation. Scientific reports, 9(1):1-12, 2019. |
|
Median QC score
|
2.0 |
| ATAC-seq? | No |
| RNA-seq? | No |
| ChIP-seq? | No |
| 3D Seq? | No |
| Other Seq? | No |