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SRR9336633,SRR9336634,SRR9336635,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRR9336633 | 59 | Anderson2020defining | PRO-seq | ligation | control | True | 4 | 1 |
| SRR9336634 | 60 | Anderson2020defining | PRO-seq | ligation | control | True | 3 | 2 |
| SRR9336635 | 61 | Anderson2020defining | PRO-seq | ligation | control | True | 1 | 3 |
| SRR9336636 | 62 | Anderson2020defining | PRO-seq | ligation | experimental | False | 3 | 1 |
| SRR9336637 | 63 | Anderson2020defining | PRO-seq | ligation | experimental | False | 3 | 2 |
| SRR9336638 | 64 | Anderson2020defining | PRO-seq | ligation | experimental | False | 1 | 3 |
| SRR9336639 | 65 | Anderson2020defining | PRO-seq | ligation | experimental | False | 3 | 1 |
| SRR9336640 | 66 | Anderson2020defining | PRO-seq | ligation | experimental | False | 3 | 2 |
| SRR9336641 | 67 | Anderson2020defining | PRO-seq | ligation | experimental | False | 2 | 3 |
| SRR9336642 | 68 | Anderson2020defining | PRO-seq | ligation | experimental | False | 4 | 1 |
| SRR9336643 | 69 | Anderson2020defining | PRO-seq | ligation | experimental | False | 1 | 2 |
| SRR9336644 | 70 | Anderson2020defining | PRO-seq | ligation | experimental | False | 3 | 3 |
| SRR9336645 | 71 | Anderson2020defining | PRO-seq | ligation | experimental | False | 3 | 1 |
| SRR9336646 | 72 | Anderson2020defining | PRO-seq | ligation | experimental | False | 4 | 2 |
| SRR9336647 | 73 | Anderson2020defining | PRO-seq | ligation | experimental | False | 3 | 3 |
| SRR9336648 | 74 | Anderson2020defining | PRO-seq | ligation | experimental | False | 3 | 1 |
| SRR9336649 | 75 | Anderson2020defining | PRO-seq | ligation | experimental | False | 2 | 2 |
| SRR9336650 | 76 | Anderson2020defining | PRO-seq | ligation | experimental | False | 3 | 3 |
| SRR9336651 | 77 | Anderson2020defining | PRO-seq | ligation | experimental | False | 3 | 1 |
| SRR9336652 | 78 | Anderson2020defining | PRO-seq | ligation | experimental | False | 3 | 2 |
| SRR9336653 | 79 | Anderson2020defining | PRO-seq | ligation | experimental | False | 3 | 3 |
| SRR9336654 | 80 | Anderson2020defining | PRO-seq | ligation | experimental | False | 1 | 1 |
| SRR9336655 | 81 | Anderson2020defining | PRO-seq | ligation | experimental | False | 1 | 2 |
| SRR9336656 | 82 | Anderson2020defining | PRO-seq | ligation | experimental | False | 2 | 3 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR9336633 | M. musculus | cell line | 3T3-L1 | ||||
| SRR9336634 | M. musculus | cell line | 3T3-L1 | ||||
| SRR9336635 | M. musculus | cell line | 3T3-L1 | ||||
| SRR9336636 | M. musculus | cell line | 3T3-L1 | ||||
| SRR9336637 | M. musculus | cell line | 3T3-L1 | ||||
| SRR9336638 | M. musculus | cell line | 3T3-L1 | ||||
| SRR9336639 | M. musculus | cell line | 3T3-L1 | ||||
| SRR9336640 | M. musculus | cell line | 3T3-L1 | ||||
| SRR9336641 | M. musculus | cell line | 3T3-L1 | ||||
| SRR9336642 | M. musculus | cell line | 3T3-L1 | ||||
| SRR9336643 | M. musculus | cell line | 3T3-L1 | ||||
| SRR9336644 | M. musculus | cell line | 3T3-L1 | ||||
| SRR9336645 | M. musculus | cell line | 3T3-L1 | ||||
| SRR9336646 | M. musculus | cell line | 3T3-L1 | ||||
| SRR9336647 | M. musculus | cell line | 3T3-L1 | ||||
| SRR9336648 | M. musculus | cell line | 3T3-L1 | ||||
| SRR9336649 | M. musculus | cell line | 3T3-L1 | ||||
| SRR9336650 | M. musculus | cell line | 3T3-L1 | ||||
| SRR9336651 | M. musculus | cell line | 3T3-L1 | ||||
| SRR9336652 | M. musculus | cell line | 3T3-L1 | ||||
| SRR9336653 | M. musculus | cell line | 3T3-L1 | ||||
| SRR9336654 | M. musculus | cell line | 3T3-L1 | ||||
| SRR9336655 | M. musculus | cell line | 3T3-L1 | ||||
| SRR9336656 | M. musculus | cell line | 3T3-L1 |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR9336633 | no treatment | None | None | None | |
| SRR9336634 | no treatment | None | None | None | |
| SRR9336635 | no treatment | None | None | None | |
| SRR9336636 | treatment | adipocyte differentiation protocol | -20 min | 0 min | 20 min |
| SRR9336637 | treatment | adipocyte differentiation protocol | -20 min | 0 min | 20 min |
| SRR9336638 | treatment | adipocyte differentiation protocol | -20 min | 0 min | 20 min |
| SRR9336639 | treatment | adipocyte differentiation protocol | -2 hr | 0 hr | 2 hr |
| SRR9336640 | treatment | adipocyte differentiation protocol | -2 hr | 0 hr | 2 hr |
| SRR9336641 | treatment | adipocyte differentiation protocol | -2 hr | 0 hr | 2 hr |
| SRR9336642 | treatment | adipocyte differentiation protocol | -3 hr | 0 hr | 3 hr |
| SRR9336643 | treatment | adipocyte differentiation protocol | -3 hr | 0 hr | 3 hr |
| SRR9336644 | treatment | adipocyte differentiation protocol | -3 hr | 0 hr | 3 hr |
| SRR9336645 | treatment | adipocyte differentiation protocol | -40 min | 0 min | 40 min |
| SRR9336646 | treatment | adipocyte differentiation protocol | -40 min | 0 min | 40 min |
| SRR9336647 | treatment | adipocyte differentiation protocol | -40 min | 0 min | 40 min |
| SRR9336648 | treatment | adipocyte differentiation protocol | -4 hr | 0 hr | 4 hr |
| SRR9336649 | treatment | adipocyte differentiation protocol | -4 hr | 0 hr | 4 hr |
| SRR9336650 | treatment | adipocyte differentiation protocol | -4 hr | 0 hr | 4 hr |
| SRR9336651 | treatment | adipocyte differentiation protocol | -1 hr | 0 hr | 1 hr |
| SRR9336652 | treatment | adipocyte differentiation protocol | -1 hr | 0 hr | 1 hr |
| SRR9336653 | treatment | adipocyte differentiation protocol | -1 hr | 0 hr | 1 hr |
| SRR9336654 | treatment | adipocyte differentiation protocol | -6 day | 0 day | 6 day |
| SRR9336655 | treatment | adipocyte differentiation protocol | -6 day | 0 day | 6 day |
| SRR9336656 | treatment | adipocyte differentiation protocol | -6 day | 0 day | 6 day |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR9336633 | 35 | 18,627,998 | 0.21348 | 0.3775 | 4.81707 | 0.76597 | 4 | 2 |
| SRR9336634 | 35 | 26,393,619 | 0.22605 | 0.3316 | 4.67548 | 0.78617 | 3 | 2 |
| SRR9336635 | 75 | 54,427,092 | 0.28816 | 0.3981 | 3.58318 | 0.82278 | 1 | 2 |
| SRR9336636 | 35 | 24,161,173 | 0.26614 | 0.4041 | 3.95219 | 0.75352 | 3 | 2 |
| SRR9336637 | 35 | 23,401,125 | 0.22087 | 0.4543 | 3.05882 | 0.7999 | 3 | 2 |
| SRR9336638 | 75 | 50,344,013 | 0.32553 | 0.4044 | 3.36498 | 0.78079 | 1 | 2 |
| SRR9336639 | 35 | 24,804,546 | 0.24461 | 0.4104 | 4.39882 | 0.77501 | 3 | 2 |
| SRR9336640 | 35 | 27,625,295 | 0.26065 | 0.3723 | 3.72401 | 0.76965 | 3 | 2 |
| SRR9336641 | 75 | 43,138,318 | 0.30212 | 0.3401 | 3.90431 | 0.77291 | 2 | 2 |
| SRR9336642 | 35 | 18,056,982 | 0.22382 | 0.4006 | 4.40659 | 0.75956 | 4 | 2 |
| SRR9336643 | 75 | 78,615,856 | 0.36836 | 0.4562 | 3.52601 | 0.81316 | 1 | 2 |
| SRR9336644 | 75 | 32,808,047 | 0.28404 | 0.3103 | 4.65253 | 0.74789 | 3 | 2 |
| SRR9336645 | 35 | 24,613,071 | 0.27978 | 0.3404 | 4.51807 | 0.72943 | 3 | 2 |
| SRR9336646 | 35 | 23,943,922 | 0.25396 | 0.2889 | 4.10315 | 0.73596 | 4 | 2 |
| SRR9336647 | 75 | 32,004,803 | 0.28338 | 0.3358 | 3.59712 | 0.75627 | 3 | 2 |
| SRR9336648 | 35 | 22,201,525 | 0.23919 | 0.366 | 4.23844 | 0.76375 | 3 | 2 |
| SRR9336649 | 75 | 118,416,134 | 0.53434 | 0.4483 | 3.73443 | 0.77367 | 2 | 2 |
| SRR9336650 | 75 | 30,018,797 | 0.25185 | 0.2742 | 4.13333 | 0.76168 | 3 | 2 |
| SRR9336651 | 35 | 20,870,884 | 0.27674 | 0.3868 | 4.0597 | 0.72244 | 3 | 2 |
| SRR9336652 | 35 | 25,884,516 | 0.25711 | 0.3139 | 3.8034 | 0.752 | 3 | 2 |
| SRR9336653 | 75 | 26,089,372 | 0.24971 | 0.3334 | 3.81798 | 0.75748 | 3 | 2 |
| SRR9336654 | 75 | 47,269,278 | 0.29181 | 0.3997 | 3.86339 | 0.78723 | 1 | 2 |
| SRR9336655 | 75 | 51,070,767 | 0.30549 | 0.4754 | 4.48327 | 0.77424 | 1 | 2 |
| SRR9336656 | 75 | 33,804,670 | 0.25331 | 0.4519 | 4.4375 | 0.78386 | 2 | 2 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR9336633 | 17066 | 7982 | 5284 | 1772 | 10430 | 5935 | 2520 | 579 |
| SRR9336634 | 18036 | 8094 | 5900 | 2057 | 10758 | 5862 | 2764 | 710 |
| SRR9336635 | 21275 | 9867 | 6572 | 3116 | 13875 | 6197 | 4423 | 1497 |
| SRR9336636 | 16089 | 6318 | 5863 | 1847 | 9347 | 4086 | 3049 | 696 |
| SRR9336637 | 13175 | 5106 | 4927 | 1562 | 7651 | 3676 | 2494 | 560 |
| SRR9336638 | 18282 | 6693 | 6865 | 2722 | 11559 | 4398 | 4367 | 1192 |
| SRR9336639 | 15953 | 6314 | 6237 | 1371 | 9727 | 3832 | 3477 | 502 |
| SRR9336640 | 15816 | 6153 | 6302 | 1540 | 9598 | 4054 | 3578 | 521 |
| SRR9336641 | 17451 | 6925 | 6832 | 1822 | 10790 | 4281 | 4006 | 728 |
| SRR9336642 | 14797 | 6245 | 5550 | 1154 | 9068 | 4153 | 2977 | 393 |
| SRR9336643 | 21112 | 8824 | 7648 | 2886 | 14683 | 4458 | 6228 | 1711 |
| SRR9336644 | 17196 | 7183 | 6390 | 1687 | 10401 | 4448 | 3505 | 605 |
| SRR9336645 | 15620 | 5946 | 5925 | 1578 | 8931 | 3834 | 2964 | 512 |
| SRR9336646 | 13995 | 5586 | 5286 | 1328 | 7983 | 3718 | 2528 | 385 |
| SRR9336647 | 14717 | 5632 | 5644 | 1667 | 8556 | 3833 | 3008 | 532 |
| SRR9336648 | 15081 | 6596 | 5453 | 1292 | 9309 | 4501 | 2871 | 442 |
| SRR9336649 | 21399 | 9040 | 7505 | 3066 | 15729 | 4630 | 6580 | 2087 |
| SRR9336650 | 15401 | 6616 | 5576 | 1383 | 9262 | 4602 | 2835 | 456 |
| SRR9336651 | 15161 | 6276 | 5653 | 1403 | 9260 | 4074 | 3183 | 533 |
| SRR9336652 | 13332 | 5528 | 4842 | 1244 | 7991 | 3893 | 2554 | 400 |
| SRR9336653 | 15279 | 6303 | 5847 | 1471 | 9253 | 4131 | 3186 | 555 |
| SRR9336654 | 18197 | 7724 | 6051 | 2657 | 11606 | 5188 | 3829 | 1127 |
| SRR9336655 | 20811 | 8696 | 6846 | 3490 | 13894 | 5397 | 5028 | 1778 |
| SRR9336656 | 16954 | 7427 | 5574 | 2197 | 10410 | 4979 | 3221 | 882 |
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