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Downloads

Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
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For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

Technical details

Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR5109935	336	Bouvyliivrand2017analysis	GRO-seq	circularization	control	True	2	1
SRR5109936	337	Bouvyliivrand2017analysis	GRO-seq	circularization	control	True	1	2
SRR5109937	338	Bouvyliivrand2017analysis	GRO-seq	circularization	control	True	2	1
SRR5109938	339	Bouvyliivrand2017analysis	GRO-seq	circularization	control	True	2	1
SRR5109939	340	Bouvyliivrand2017analysis	GRO-seq	circularization	control	True	1	1
SRR5109940	341	Bouvyliivrand2017analysis	GRO-seq	circularization	control	True	2	1
SRR5109942	342	Bouvyliivrand2017analysis	GRO-seq	circularization	control	True	2	1
SRR5109943	343	Bouvyliivrand2017analysis	GRO-seq	circularization	control	True	1	1
SRR5109944	344	Bouvyliivrand2017analysis	GRO-seq	circularization	control	True	1	2
SRR5109945	345	Bouvyliivrand2017analysis	GRO-seq	circularization	control	True	2	1
SRR5109946	346	Bouvyliivrand2017analysis	GRO-seq	circularization	control	True	1	1
SRR5109947	347	Bouvyliivrand2017analysis	GRO-seq	circularization	control	True	1	1
SRR5109948	348	Bouvyliivrand2017analysis	GRO-seq	circularization	control	True	2	1
SRR5628716	349	Bouvyliivrand2017analysis	GRO-seq	circularization	control	True	2	1
SRZ5109941	350	Bouvyliivrand2017analysis	GRO-seq	circularization	control	True	1	1
SRZ5251072	351	Bouvyliivrand2017analysis	GRO-seq	circularization	control	True	3	1
SRZ5251074	352	Bouvyliivrand2017analysis	GRO-seq	circularization	experimental	False	3	1

Cellular details

Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR5109935	H. sapiens	cell line	HEK293T
SRR5109936	H. sapiens	cell line	HEK293T
SRR5109937	H. sapiens	cell line	A549
SRR5109938	H. sapiens	cell line	ARPE-19
SRR5109939	H. sapiens	cell line	HeLa
SRR5109940	H. sapiens	cell line	HepG2
SRR5109942	H. sapiens	cell line	MRC5
SRR5109943	H. sapiens	cell line	NHA
SRR5109944	H. sapiens	cell line	NHA
SRR5109945	H. sapiens	cell line	SKOV3
SRR5109946	H. sapiens	cell line	T98G
SRR5109947	H. sapiens	cell line	THP1
SRR5109948	H. sapiens	cell line	U87
SRR5628716	H. sapiens	primary cell	HUVEC
SRZ5109941	H. sapiens	cell line	ESC	hESC9
SRZ5251072	H. sapiens	primary cell	HUVEC
SRZ5251074	H. sapiens	primary cell	HUVEC

Conditions

Sample name	Condition type	Treatment	Start time	End time	Duration
SRR5109935	no treatment		None	None	None
SRR5109936	no treatment		None	None	None
SRR5109937	no treatment		None	None	None
SRR5109938	no treatment		None	None	None
SRR5109939	no treatment		None	None	None
SRR5109940	no treatment		None	None	None
SRR5109942	no treatment		None	None	None
SRR5109943	no treatment		None	None	None
SRR5109944	no treatment		None	None	None
SRR5109945	no treatment		None	None	None
SRR5109946	no treatment		None	None	None
SRR5109947	no treatment		None	None	None
SRR5109948	no treatment		None	None	None
SRR5628716	no treatment		None	None	None
SRZ5109941	no treatment		None	None	None
SRZ5251072	no treatment		None	None	None
SRZ5251074	treatment	VEGF-A	-2 hr	0 hr	2 hr

Sample metrics

Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR5109935	50	22,057,129	0.62525	0.9318	4.75899	0.38726	2	2
SRR5109936	50	22,433,854	0.39111	0.9247	4.31175	0.65015	1	2
SRR5109937	50	19,765,001	0.43616	0.9094	3.66667	0.59319	2	2
SRR5109938	51	19,439,062	0.30022	0.9325	2.87172	0.739	2	1
SRR5109939	50	22,466,667	0.40721	0.8988	3.72205	0.61916	1	2
SRR5109940	52	16,802,516	0.28838	0.9331	2.87205	0.73432	2	1
SRR5109942	51	19,023,756	0.37656	0.9365	3.38339	0.64952	2	2
SRR5109943	51	22,027,587	0.34658	0.8535	4.26497	0.68495	1	2
SRR5109944	51	20,384,626	0.28369	0.862	2.68805	0.76418	1	1
SRR5109945	51	19,165,925	0.32877	0.932	4.33657	0.70071	2	2
SRR5109946	51	20,308,825	0.40621	0.8937	4.03401	0.61642	1	2
SRR5109947	50	20,911,857	0.24966	0.911	2.8113	0.79354	1	1
SRR5109948	50	18,245,061	0.41678	0.9132	3.57374	0.62007	2	2
SRR5628716	51	26,020,807	0.63948	0.9318	2.92102	0.45707	2	1
SRZ5109941	40	27,062,942	0.40674	0.8204	2.96258	0.65612	1	1
SRZ5251072	51	21,323,756	0.78504	0.9168	2.79775	0.32282	3	1
SRZ5251074	51	29,414,758	0.79989	0.8561	2.57619	0.35523	3	1

Bidirectionals

Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR5109935	8532	3758	3495	299	6151	3816	1711	590
SRR5109936	25432	14517	9148	2785	19168	10312	6648	2713
SRR5109937	25449	11528	9523	4862	18947	9341	6548	3551
SRR5109938	34869	10995	15044	8919	25161	8582	10832	5896
SRR5109939	24074	11433	9051	4262	18126	8441	6774	3212
SRR5109940	25909	11219	9980	5036	17631	8236	6477	3297
SRR5109942	23646	10466	9538	3863	17261	8359	6746	2555
SRR5109943	27760	13760	10374	4360	19793	9439	7780	3161
SRR5109944	36833	16428	14242	7240	25152	10178	10737	4844
SRR5109945	27850	11509	11077	5303	18931	8332	7244	3430
SRR5109946	25122	10644	9537	5104	17480	7746	6508	3534
SRR5109947	25584	9956	10229	5658	23507	9313	9287	5245
SRR5109948	44903	13886	18316	12888	34164	10877	13840	9804
SRR5628716	23413	6765	10550	5643	16824	6270	6637	3987
SRZ5109941	21998	9913	8437	3804	17245	8578	5799	3231
SRZ5251072	12467	4727	5276	2049	9599	5529	3038	1423
SRZ5251074	14106	5201	6278	2324	11258	6121	3828	1665