DBNascent | Samples

SRZ1745515,SRZ1745517,SRZ1745519,...

**Downloads**
Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
ZIP archive	ZIP archive	ZIP archive	ZIP archive
For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

**Technical details**
Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRZ1745515	698	Estaras2015smad	GRO-seq	ligation	control	True	2	1
SRZ1745517	699	Estaras2015smad	GRO-seq	ligation	experimental	False	2	1
SRZ1745519	700	Estaras2015smad	GRO-seq	ligation	experimental	False	2	1
SRZ1745521	701	Estaras2015smad	GRO-seq	ligation	experimental	False	2	1
SRZ1745523	702	Estaras2015smad	GRO-seq	ligation	control	False	2	1
SRZ1745525	703	Estaras2015smad	GRO-seq	ligation	experimental	False	2	1
SRZ1745527	704	Estaras2015smad	GRO-seq	ligation	experimental	False	2	1
SRZ1745529	705	Estaras2015smad	GRO-seq	ligation	experimental	False	2	1

**Cellular details**
Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRZ1745515	H. sapiens	cell line	ESC	H1
SRZ1745517	H. sapiens	cell line	ESC	H1
SRZ1745519	H. sapiens	cell line	ESC	H1
SRZ1745521	H. sapiens	cell line	ESC	H1
SRZ1745523	H. sapiens	cell line	ESC	H1			siRNA control
SRZ1745525	H. sapiens	cell line	ESC	H1			siRNA control
SRZ1745527	H. sapiens	cell line	ESC	H1			siRNA Yap1
SRZ1745529	H. sapiens	cell line	ESC	H1			siRNA Yap1

**Conditions**
Sample name	Condition type	Treatment	Start time	End time	Duration
SRZ1745515	no treatment		None	None	None
SRZ1745517	treatment	Wnt3a (200 ng/mL)	-6 hr	0 hr	6 hr
SRZ1745519	treatment	Wnt3a (200 ng/mL)	-6 hr	0 hr	6 hr
	treatment	activin A (100 ng/mL)	-6 hr	0 hr	6 hr
SRZ1745521	treatment	activin A (100 ng/mL)	-6 hr	0 hr	6 hr
SRZ1745523	no treatment		None	None	None
SRZ1745525	treatment	Wnt3a (200 ng/mL)	-6 hr	0 hr	6 hr
	treatment	activin A (100 ng/mL)	-6 hr	0 hr	6 hr
SRZ1745527	no treatment		None	None	None
SRZ1745529	treatment	Wnt3a (200 ng/mL)	-6 hr	0 hr	6 hr
	treatment	activin A (100 ng/mL)	-6 hr	0 hr	6 hr

**Sample metrics**
Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRZ1745515	51	36,027,278	0.56447	0.7289	2.99452	0.46933	2	1
SRZ1745517	51	44,716,153	0.58988	0.7371	3.17574	0.45412	2	2
SRZ1745519	51	31,163,597	0.59353	0.7618	3.42553	0.43333	2	2
SRZ1745521	51	41,787,385	0.58048	0.7859	3.11706	0.46085	2	2
SRZ1745523	51	51,237,552	0.63646	0.7289	3.0368	0.40681	2	2
SRZ1745525	51	44,022,177	0.62178	0.7517	3.07876	0.42065	2	2
SRZ1745527	51	46,292,953	0.64752	0.7366	3.1924	0.39679	2	2
SRZ1745529	51	43,350,947	0.60389	0.7557	2.90308	0.44225	2	1

**Bidirectionals**
Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRZ1745515	14003	4540	6070	2508	8319	3366	2906	2041
SRZ1745517	17669	5671	7427	3553	10814	4217	3786	2751
SRZ1745519	12706	4194	5366	2222	7149	3042	2395	1722
SRZ1745521	15596	5261	6609	2871	10177	4059	3537	2469
SRZ1745523	18939	6264	8319	3375	10736	4464	3867	2397
SRZ1745525	18255	6172	7972	3148	10610	4553	3777	2243
SRZ1745527	19061	6468	8515	3160	11311	5062	4029	2223
SRZ1745529	17833	5932	7970	2895	10723	4546	3932	2178