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Downloads

Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
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For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

Technical details

Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR4053664	899	Godfrey2017mll	TT-seq	random primed	control	False	1	1
SRR4053665	900	Godfrey2017mll	TT-seq	random primed	control	False	1	2
SRR4053666	901	Godfrey2017mll	TT-seq	random primed	control	False	1	3
SRR4053667	902	Godfrey2017mll	TT-seq	random primed	experimental	False	1	1
SRR4053668	903	Godfrey2017mll	TT-seq	random primed	experimental	False	1	2
SRR4053669	904	Godfrey2017mll	TT-seq	random primed	experimental	False	1	3
SRR4305537	905	Godfrey2017mll	TT-seq	random primed	control	True	1	1
SRR4305538	906	Godfrey2017mll	TT-seq	random primed	control	True	1	2
SRR4305539	907	Godfrey2017mll	TT-seq	random primed	control	True	1	3
SRR4305540	908	Godfrey2017mll	TT-seq	random primed	experimental	False	1	1
SRR4305541	909	Godfrey2017mll	TT-seq	random primed	experimental	False	1	2
SRR4305542	910	Godfrey2017mll	TT-seq	random primed	experimental	False	1	3

Cellular details

Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR4053664	H. sapiens	cell line	SEM				siRNA control
SRR4053665	H. sapiens	cell line	SEM				siRNA control
SRR4053666	H. sapiens	cell line	SEM				siRNA control
SRR4053667	H. sapiens	cell line	SEM				siRNA Mll-Af4
SRR4053668	H. sapiens	cell line	SEM				siRNA Mll-Af4
SRR4053669	H. sapiens	cell line	SEM				siRNA Mll-Af4
SRR4305537	H. sapiens	cell line	SEM
SRR4305538	H. sapiens	cell line	SEM
SRR4305539	H. sapiens	cell line	SEM
SRR4305540	H. sapiens	cell line	SEM
SRR4305541	H. sapiens	cell line	SEM
SRR4305542	H. sapiens	cell line	SEM

Conditions

Sample name	Condition type	Treatment	Start time	End time	Duration
SRR4053664	no treatment		None	None	None
SRR4053665	no treatment		None	None	None
SRR4053666	no treatment		None	None	None
SRR4053667	no treatment		None	None	None
SRR4053668	no treatment		None	None	None
SRR4053669	no treatment		None	None	None
SRR4305537	vehicle	DMSO	-7 day	0 day	7 day
SRR4305538	vehicle	DMSO	-7 day	0 day	7 day
SRR4305539	vehicle	DMSO	-7 day	0 day	7 day
SRR4305540	treatment	pinometostat (2 microM)	-7 day	0 day	7 day
SRR4305541	treatment	pinometostat (2 microM)	-7 day	0 day	7 day
SRR4305542	treatment	pinometostat (2 microM)	-7 day	0 day	7 day

Sample metrics

Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR4053664	35	85,312,769	0.3619	0.8755	9.0579	0.56567	1	5
SRR4053665	35	84,595,282	0.35474	0.8733	8.3927	0.57164	1	4
SRR4053666	35	92,742,397	0.35026	0.8733	8.56915	0.58121	1	4
SRR4053667	35	87,576,687	0.303	0.8862	7.95977	0.62932	1	4
SRR4053668	35	89,193,061	0.3118	0.8721	8.05258	0.62259	1	4
SRR4053669	35	87,718,984	0.3034	0.8661	7.77262	0.63009	1	4
SRR4305537	35	41,950,592	0.36277	0.954	7.67572	0.51262	1	4
SRR4305538	35	44,043,061	0.36426	0.9533	8.07227	0.51312	1	4
SRR4305539	35	43,929,368	0.32393	0.9499	7.34679	0.55606	1	4
SRR4305540	35	48,658,454	0.2033	0.955	5.21708	0.68512	1	3
SRR4305541	35	50,601,445	0.16511	0.9573	4.39148	0.73338	1	2
SRR4305542	35	39,181,962	0.32407	0.9537	6.8193	0.56119	1	3

Bidirectionals

Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR4053664	13894	6733	5281	908	13816	5493	5514	1871
SRR4053665	13225	6446	5093	805	13737	5476	5485	1905
SRR4053666	13838	6835	5237	899	14593	5673	5803	2088
SRR4053667	13579	6466	5215	995	14868	5615	6099	2160
SRR4053668	13569	6626	5162	928	14898	5621	6036	2169
SRR4053669	13584	6599	5192	926	14690	5571	5960	2153
SRR4305537	12357	6186	4982	523	9315	4489	3413	1009
SRR4305538	11781	5963	4649	505	9371	4592	3343	1054
SRR4305539	11513	5661	4511	564	9498	4396	3503	1133
SRR4305540	11326	5557	4425	706	11194	4764	4406	1466
SRR4305541	9804	4529	3924	631	10918	4231	4569	1476
SRR4305542	10709	5110	4171	586	8585	4114	3112	994