DBNascent | Samples

SRR1035898,SRR1035899,SRR1035900,...

**Downloads**
Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
ZIP archive	ZIP archive	ZIP archive	ZIP archive
For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

**Technical details**
Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR1035898	1174	Kaikkonen2014control	GRO-seq	circularization	control	True	2	1
SRR1035899	1175	Kaikkonen2014control	GRO-seq	circularization	experimental	False	2	1
SRR1035900	1176	Kaikkonen2014control	GRO-seq	circularization	control	True	2	1
SRR1035901	1177	Kaikkonen2014control	GRO-seq	circularization	experimental	False	2	1
SRR1406747	1178	Kaikkonen2014control	GRO-seq	circularization	control	True	3	2
SRR1406748	1179	Kaikkonen2014control	GRO-seq	circularization	experimental	False	2	2

**Cellular details**
Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR1035898	H. sapiens	primary cell	HUVEC
SRR1035899	H. sapiens	primary cell	HUVEC
SRR1035900	H. sapiens	primary cell	HAEC
SRR1035901	H. sapiens	primary cell	HAEC
SRR1406747	H. sapiens	primary cell	HUVEC
SRR1406748	H. sapiens	primary cell	HUVEC

**Conditions**
Sample name	Condition type	Treatment	Start time	End time	Duration
SRR1035898	no treatment		None	None	None
SRR1035899	treatment	VEGF-A165 (50 ng/mL)	-2 hr	0 hr	2 hr
SRR1035900	no treatment		None	None	None
SRR1035901	treatment	VEGF-A165 (50 ng/mL)	-2 hr	0 hr	2 hr
SRR1406747	no treatment		None	None	None
SRR1406748	treatment	VEGF-A165 (50 ng/mL)	-2 hr	0 hr	2 hr

**Sample metrics**
Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR1035898	48	17,047,198	0.38229	0.9076	2.68006	0.67134	2	1
SRR1035899	48	17,956,826	0.45521	0.9227	3.07154	0.62556	2	2
SRR1035900	50	21,751,779	0.50683	0.9053	3.40989	0.55444	2	2
SRR1035901	50	15,209,673	0.52339	0.8818	3.345	0.49841	2	2
SRR1406747	51	13,650,121	0.4876	0.9535	2.6	0.54628	3	1
SRR1406748	51	15,530,647	0.53318	0.9384	2.79698	0.5054	2	1

**Bidirectionals**
Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR1035898	16461	6408	7385	2713	12545	5779	4987	1933
SRR1035899	14614	5527	6595	2332	11754	5439	4775	1765
SRR1035900	23856	10106	10026	4253	19349	8698	7984	3186
SRR1035901	18194	8466	7701	2388	14156	7844	5173	1701
SRR1406747	18431	5644	8910	3464	11334	5150	4352	2111
SRR1406748	18975	6620	8809	3344	12445	6032	4706	2025