DBNascent | Samples

SRR5508393,SRR5508394,SRR5508395,...

**Downloads**
Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
ZIP archive	ZIP archive	ZIP archive	ZIP archive
For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

**Technical details**
Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR5508393	1626	Liu2017dynamic	GRO-seq	circularization	control	False	1	2
SRR5508394	1627	Liu2017dynamic	GRO-seq	circularization	control	True	1	3
SRR5508395	1628	Liu2017dynamic	GRO-seq	circularization	experimental	False	3	1
SRR5508396	1629	Liu2017dynamic	GRO-seq	circularization	experimental	False	3	2
SRR5508397	1630	Liu2017dynamic	GRO-seq	circularization	experimental	False	4	1
SRR5508398	1631	Liu2017dynamic	GRO-seq	circularization	experimental	False	4	2
SRR5508399	1632	Liu2017dynamic	GRO-seq	circularization	experimental	False	3	3
SRR5508400	1633	Liu2017dynamic	GRO-seq	circularization	experimental	False	4	1
SRR5508401	1634	Liu2017dynamic	GRO-seq	circularization	experimental	False	4	2
SRR5508402	1635	Liu2017dynamic	GRO-seq	circularization	experimental	False	3	3
SRR5508392	1625	Liu2017dynamic	GRO-seq	circularization	control	False	3	1

**Cellular details**
Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR5508393	H. sapiens	primary cell	hematopoietic progenitor cell				siRNA control
SRR5508394	H. sapiens	primary cell	hematopoietic progenitor cell
SRR5508395	H. sapiens	primary cell	hematopoietic progenitor cell
SRR5508396	H. sapiens	primary cell	hematopoietic progenitor cell
SRR5508397	H. sapiens	primary cell	hematopoietic progenitor cell				siRNA NelfB
SRR5508398	H. sapiens	primary cell	hematopoietic progenitor cell				siRNA NelfB
SRR5508399	H. sapiens	primary cell	hematopoietic progenitor cell				siRNA NelfB
SRR5508400	H. sapiens	primary cell	hematopoietic progenitor cell				siRNA NelfE
SRR5508401	H. sapiens	primary cell	hematopoietic progenitor cell				siRNA NelfE
SRR5508402	H. sapiens	primary cell	hematopoietic progenitor cell				siRNA NelfE
SRR5508392	H. sapiens	primary cell	hematopoietic progenitor cell				siRNA control

**Conditions**
Sample name	Condition type	Treatment	Start time	End time	Duration
SRR5508393	no treatment		None	None	None
SRR5508394	no treatment		None	None	None
SRR5508395	treatment	G-CSF (10 ng/mL)	-1 day	0 day	1 day
SRR5508396	treatment	G-CSF (10 ng/mL)	-1 day	0 day	1 day
SRR5508397	no treatment		None	None	None
SRR5508398	no treatment		None	None	None
SRR5508399	no treatment		None	None	None
SRR5508400	no treatment		None	None	None
SRR5508401	no treatment		None	None	None
SRR5508402	no treatment		None	None	None
SRR5508392	no treatment		None	None	None

**Sample metrics**
Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR5508393	75	34,305,564	0.39246	0.9302	3.59496	0.7518	1	2
SRR5508394	76	45,141,100	0.40551	0.7973	3.32429	0.7697	1	2
SRR5508395	76	48,942,887	0.7249	0.744	3.05692	0.5379	3	2
SRR5508396	76	35,686,207	0.74332	0.7028	3.35943	0.43554	3	2
SRR5508397	75	28,977,354	0.86379	0.747	1.8658	0.24034	4	2
SRR5508398	75	50,959,806	0.91336	0.7598	1.82651	0.24308	4	2
SRR5508399	75	30,448,097	0.78495	0.7999	1.78517	0.36545	3	2
SRR5508400	75	46,749,529	0.88321	0.8129	1.50663	0.30073	4	1
SRR5508401	75	64,850,710	0.9116	0.8174	1.47813	0.29824	4	2
SRR5508402	75	28,579,607	0.75613	0.8026	1.66113	0.38652	3	2
SRR5508392	75	54,057,599	0.66424	0.9105	4.59615	0.52876	3	2

**Bidirectionals**
Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR5508393	35635	15132	14122	6715	25845	8453	11123	5480
SRR5508394	34003	14943	12880	6835	28168	9299	12494	6146
SRR5508395	24082	6316	12816	3931	18859	7007	8491	3331
SRR5508396	18185	4279	9904	2897	14215	5764	6200	2214
SRR5508397	7240	891	4737	1194	6500	881	4298	1123
SRR5508398	6773	896	4397	1121	7731	1029	5151	1344
SRR5508399	17522	1969	11306	3070	11587	1988	7053	2207
SRR5508400	11071	1760	6904	1750	11390	1953	7422	1754
SRR5508401	10148	1643	6267	1639	12279	1940	8091	1942
SRR5508402	18942	2078	12413	3277	12872	1929	7988	2450
SRR5508392	32590	14000	13343	5035	23579	7947	9660	4468