DBNascent | Samples

SRR5227979,SRR5227980,SRR5227981,...

**Downloads**
Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
ZIP archive	ZIP archive	ZIP archive	ZIP archive
For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

**Technical details**
Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR5227979	1650	Liu2017transcriptional	GRO-seq	ligation	control	False	1	1
SRR5227980	1651	Liu2017transcriptional	GRO-seq	ligation	control	False	1	2
SRR5227981	1652	Liu2017transcriptional	GRO-seq	ligation	experimental	False	1	1
SRR5227982	1653	Liu2017transcriptional	GRO-seq	ligation	experimental	False	1	2
SRR5227983	1654	Liu2017transcriptional	GRO-seq	ligation	experimental	False	1	1
SRR5227985	1655	Liu2017transcriptional	GRO-seq	ligation	experimental	False	1	2

**Cellular details**
Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR5227979	H. sapiens	cell line	MCF7
SRR5227980	H. sapiens	cell line	MCF7
SRR5227981	H. sapiens	cell line	MCF7
SRR5227982	H. sapiens	cell line	MCF7
SRR5227983	H. sapiens	cell line	MCF7
SRR5227985	H. sapiens	cell line	MCF7

**Conditions**
Sample name	Condition type	Treatment	Start time	End time	Duration
SRR5227979	treatment	charcoal-stripped FBS (10%)	-3 day	0 day	3 day
SRR5227980	treatment	charcoal-stripped FBS (10%)	-3 day	0 day	3 day
SRR5227981	treatment	thymidine (2 mM)	-17 hr	0 hr	17 hr
	treatment	thymidine (2 mM)	-44 hr	-26 hr	18 hr
SRR5227982	treatment	thymidine (2 mM)	-17 hr	0 hr	17 hr
	treatment	thymidine (2 mM)	-44 hr	-26 hr	18 hr
SRR5227983	treatment	nocodazole (200 ng/mL)	-12 hr	0 hr	12 hr
	treatment	thymidine (2 mM)	-39 hr	-15 hr	1 day
SRR5227985	treatment	nocodazole (200 ng/mL)	-12 hr	0 hr	12 hr
	treatment	thymidine (2 mM)	-39 hr	-15 hr	1 day

**Sample metrics**
Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR5227979	49	27,746,479	0.15783	0.9322	2.50212	0.74882	1	1
SRR5227980	49	29,423,750	0.14703	0.9279	2.48704	0.7544	1	1
SRR5227981	49	26,101,998	0.12205	0.9473	2.02929	0.75913	1	1
SRR5227982	49	35,132,693	0.12585	0.9514	2.21541	0.77055	1	1
SRR5227983	49	29,306,292	0.08481	0.953	2.09923	0.808	1	1
SRR5227985	49	38,060,651	0.11265	0.949	2.35712	0.79107	1	1

**Bidirectionals**
Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR5227979	41280	11988	19013	7874	22100	6744	9683	4687
SRR5227980	43136	12430	19801	8355	22658	6716	9918	4892
SRR5227981	32007	9425	15119	5898	17227	5598	7341	3748
SRR5227982	33138	10362	15353	5868	20582	6372	8963	4338
SRR5227983	30863	9396	14355	5632	17400	5587	7429	3720
SRR5227985	33316	10867	15208	5673	21000	6526	9021	4432