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SRR8887162,SRR8887163,SRR8887164,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRR8887162 | 1762 | Ma2020super | GRO-seq | ligation | control | True | 2 | 1 |
| SRR8887163 | 1763 | Ma2020super | GRO-seq | ligation | experimental | False | 2 | 1 |
| SRR8887164 | 1764 | Ma2020super | GRO-seq | ligation | control | False | 2 | 1 |
| SRR8887165 | 1765 | Ma2020super | GRO-seq | ligation | experimental | False | 3 | 1 |
| SRR8887174 | 1766 | Ma2020super | GRO-seq | ligation | control | True | 4 | 2 |
| SRR8887175 | 1767 | Ma2020super | GRO-seq | ligation | experimental | False | 3 | 2 |
| SRR10897090 | 1760 | Ma2020super | GRO-seq | ligation | control | True | 2 | 1 |
| SRR10897091 | 1761 | Ma2020super | GRO-seq | ligation | experimental | False | 2 | 1 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR8887162 | H. sapiens | cell line | A2780 | ||||
| SRR8887163 | H. sapiens | cell line | A2780 | ||||
| SRR8887164 | H. sapiens | cell line | A2780 | cisplatin resistant | |||
| SRR8887165 | H. sapiens | cell line | A2780 | cisplatin resistant | |||
| SRR8887174 | H. sapiens | cell line | A2780 | ||||
| SRR8887175 | H. sapiens | cell line | A2780 | ||||
| SRR10897090 | H. sapiens | cell line | A549 | ||||
| SRR10897091 | H. sapiens | cell line | A549 |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR8887162 | vehicle | PBS | -1 day | 0 day | 1 day |
| vehicle | PBS | -3 day | -1 day | 2 day | |
| SRR8887163 | treatment | cisplatin (2 microM) | -1 day | 0 day | 1 day |
| treatment | cisplatin (2 microM) | -3 day | -1 day | 2 day | |
| SRR8887164 | vehicle | PBS | -1 day | 0 day | 1 day |
| vehicle | PBS | -3 day | -1 day | 2 day | |
| SRR8887165 | treatment | cisplatin (6 microM) | -1 day | 0 day | 1 day |
| treatment | cisplatin (6 microM) | -3 day | -1 day | 2 day | |
| SRR8887174 | vehicle | PBS | -1 day | 0 day | 1 day |
| vehicle | PBS | -3 day | -1 day | 2 day | |
| SRR8887175 | treatment | cisplatin (2 microM) | -1 day | 0 day | 1 day |
| treatment | cisplatin (2 microM) | -3 day | -1 day | 2 day | |
| SRR10897090 | vehicle | PBS | -1 day | 0 day | 1 day |
| vehicle | PBS | -3 day | -1 day | 2 day | |
| SRR10897091 | treatment | cisplatin (800 microM) | -1 day | 0 day | 1 day |
| treatment | cisplatin (800 microM) | -3 day | -1 day | 2 day |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR8887162 | 51 | 37,562,231 | 0.53472 | 0.859 | 3.12205 | 0.59562 | 2 | 2 |
| SRR8887163 | 51 | 41,126,189 | 0.583 | 0.8691 | 2.93931 | 0.55524 | 2 | 1 |
| SRR8887164 | 50 | 34,865,051 | 0.51718 | 0.8698 | 2.96952 | 0.55824 | 2 | 1 |
| SRR8887165 | 50 | 45,546,693 | 0.68696 | 0.864 | 2.60873 | 0.48096 | 3 | 1 |
| SRR8887174 | 50 | 7,443,262 | 0.43148 | 0.8166 | 3.56571 | 0.53699 | 4 | 2 |
| SRR8887175 | 50 | 10,943,344 | 0.48981 | 0.8202 | 3.60816 | 0.50501 | 3 | 2 |
| SRR10897090 | 76 | 30,911,814 | 0.61763 | 0.8996 | 3.0442 | 0.58331 | 2 | 2 |
| SRR10897091 | 76 | 23,575,262 | 0.64753 | 0.6269 | 3.775 | 0.39929 | 2 | 2 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR8887162 | 30331 | 15417 | 10393 | 4644 | 18696 | 8712 | 6179 | 3538 |
| SRR8887163 | 29383 | 14644 | 10131 | 4526 | 18064 | 8419 | 5927 | 3393 |
| SRR8887164 | 31890 | 17356 | 10284 | 4841 | 19413 | 9688 | 6094 | 3644 |
| SRR8887165 | 26822 | 13910 | 8796 | 4165 | 16998 | 8676 | 5159 | 3139 |
| SRR8887174 | 11117 | 6236 | 3872 | 1312 | 10216 | 7213 | 2524 | 1058 |
| SRR8887175 | 15554 | 8306 | 5592 | 2031 | 12304 | 7953 | 3332 | 1392 |
| SRR10897090 | 37411 | 10184 | 17392 | 7945 | 20545 | 7302 | 7813 | 5312 |
| SRR10897091 | 17066 | 5787 | 7707 | 1896 | 6909 | 3874 | 2168 | 790 |
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