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SRR097862,SRR097863,SRR097864,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | QC score | Replicate | Outlier? |
| SRR097862 | 1848 | Min2011regulating | GRO-seq | ligation | control | 4 | 3 | No |
| SRR097863 | 1849 | Min2011regulating | GRO-seq | ligation | control | 4 | 1 | No |
| SRR097864 | 1850 | Min2011regulating | GRO-seq | ligation | control | 4 | 2 | No |
| SRZ097854 | 1851 | Min2011regulating | GRO-seq | ligation | control | 5 | 1 | No |
| SRZ097858 | 1852 | Min2011regulating | GRO-seq | ligation | control | 5 | 2 | No |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR097862 | M. musculus | cell line | ESC | V6.5 | C57BL/6(f) x 129/Sv(m) | ||
| SRR097863 | M. musculus | primary cell | MEF | C57BL/6(f) x 129/Sv(m) | |||
| SRR097864 | M. musculus | primary cell | MEF | C57BL/6(f) x 129/Sv(m) | |||
| SRZ097854 | M. musculus | cell line | ESC | V6.5 | C57BL/6(f) x 129/Sv(m) | ||
| SRZ097858 | M. musculus | cell line | ESC | V6.5 | C57BL/6(f) x 129/Sv(m) |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR097862 | no treatment | None | None | None | |
| SRR097863 | no treatment | None | None | None | |
| SRR097864 | no treatment | None | None | None | |
| SRZ097854 | no treatment | None | None | None | |
| SRZ097858 | no treatment | None | None | None |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR097862 | 35 | 7,745,762 | 0.47098 | 0.7211 | 2.52404 | 0.50753 | 4 | 1 |
| SRR097863 | 35 | 7,901,773 | 0.56847 | 0.6558 | 2.17553 | 0.40662 | 4 | 1 |
| SRR097864 | 35 | 6,954,696 | 0.46245 | 0.6533 | 2.19231 | 0.50529 | 4 | 1 |
| SRZ097854 | 36 | 4,206,486 | 0.40366 | 0.6317 | 2.49057 | 0.53645 | 5 | 1 |
| SRZ097858 | 36 | 4,438,796 | 0.39741 | 0.6572 | 2.42373 | 0.5513 | 5 | 1 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR097862 | 13141 | 5160 | 3977 | 2078 | 7936 | 4597 | 1420 | 1176 |
| SRR097863 | 10347 | 3988 | 3637 | 1380 | 5444 | 3353 | 1110 | 533 |
| SRR097864 | 10338 | 3920 | 3633 | 1517 | 5156 | 3140 | 1049 | 542 |
| SRZ097854 | 6520 | 2745 | 1793 | 1015 | 3433 | 2195 | 482 | 445 |
| SRZ097858 | 7412 | 3170 | 2061 | 1146 | 3965 | 2492 | 564 | 536 |
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