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Downloads

Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
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Technical details

Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR5274970	1880	Murakami2017dynamic	GRO-seq	circularization	control	False	4	1
SRR5274971	1881	Murakami2017dynamic	GRO-seq	circularization	control	False	1	2
SRR5274972	1882	Murakami2017dynamic	GRO-seq	circularization	control	False	3	3
SRR5274973	1883	Murakami2017dynamic	GRO-seq	circularization	control	False	1	4
SRR5274974	1884	Murakami2017dynamic	GRO-seq	circularization	experimental	False	4	1
SRR5274975	1885	Murakami2017dynamic	GRO-seq	circularization	experimental	False	2	2
SRR5274976	1886	Murakami2017dynamic	GRO-seq	circularization	experimental	False	3	3
SRR5274977	1887	Murakami2017dynamic	GRO-seq	circularization	experimental	False	1	4
SRR5274978	1888	Murakami2017dynamic	GRO-seq	circularization	experimental	False	3	1
SRR5274979	1889	Murakami2017dynamic	GRO-seq	circularization	experimental	False	2	2
SRR5274980	1890	Murakami2017dynamic	GRO-seq	circularization	experimental	False	2	3
SRR5274981	1891	Murakami2017dynamic	GRO-seq	circularization	experimental	False	1	4
SRR5274982	1892	Murakami2017dynamic	GRO-seq	circularization	experimental	False	4	1
SRR5274983	1893	Murakami2017dynamic	GRO-seq	circularization	experimental	False	2	2
SRR5274984	1894	Murakami2017dynamic	GRO-seq	circularization	experimental	False	3	3
SRR5274985	1895	Murakami2017dynamic	GRO-seq	circularization	experimental	False	1	4
SRR5274986	1896	Murakami2017dynamic	GRO-seq	circularization	experimental	False	5	1
SRR5274987	1897	Murakami2017dynamic	GRO-seq	circularization	experimental	False	3	2
SRR5274988	1898	Murakami2017dynamic	GRO-seq	circularization	experimental	False	4	3
SRR5274989	1899	Murakami2017dynamic	GRO-seq	circularization	experimental	False	1	4
SRR5274990	1900	Murakami2017dynamic	GRO-seq	circularization	experimental	False	4	1
SRR5274991	1901	Murakami2017dynamic	GRO-seq	circularization	experimental	False	4	2
SRR5274992	1902	Murakami2017dynamic	GRO-seq	circularization	experimental	False	3	3
SRR5274993	1903	Murakami2017dynamic	GRO-seq	circularization	experimental	False	3	4

Cellular details

Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR5274970	H. sapiens	cell line	MDA-MB-231			Esr1 (stable)
SRR5274971	H. sapiens	cell line	MDA-MB-231			Esr1 (stable)
SRR5274972	H. sapiens	cell line	MDA-MB-231			Esr1 (stable)
SRR5274973	H. sapiens	cell line	MDA-MB-231			Esr1 (stable)
SRR5274974	H. sapiens	cell line	MDA-MB-231			Esr1 (stable)
SRR5274975	H. sapiens	cell line	MDA-MB-231			Esr1 (stable)
SRR5274976	H. sapiens	cell line	MDA-MB-231			Esr1 (stable)
SRR5274977	H. sapiens	cell line	MDA-MB-231			Esr1 (stable)
SRR5274978	H. sapiens	cell line	MDA-MB-231			Esr1 (stable)
SRR5274979	H. sapiens	cell line	MDA-MB-231			Esr1 (stable)
SRR5274980	H. sapiens	cell line	MDA-MB-231			Esr1 (stable)
SRR5274981	H. sapiens	cell line	MDA-MB-231			Esr1 (stable)
SRR5274982	H. sapiens	cell line	MDA-MB-231			Esr1 L540Q (stable)
SRR5274983	H. sapiens	cell line	MDA-MB-231			Esr1 L540Q (stable)
SRR5274984	H. sapiens	cell line	MDA-MB-231			Esr1 L540Q (stable)
SRR5274985	H. sapiens	cell line	MDA-MB-231			Esr1 L540Q (stable)
SRR5274986	H. sapiens	cell line	MDA-MB-231			Esr1 L540Q (stable)
SRR5274987	H. sapiens	cell line	MDA-MB-231			Esr1 L540Q (stable)
SRR5274988	H. sapiens	cell line	MDA-MB-231			Esr1 L540Q (stable)
SRR5274989	H. sapiens	cell line	MDA-MB-231			Esr1 L540Q (stable)
SRR5274990	H. sapiens	cell line	MDA-MB-231			Esr1 L540Q (stable)
SRR5274991	H. sapiens	cell line	MDA-MB-231			Esr1 L540Q (stable)
SRR5274992	H. sapiens	cell line	MDA-MB-231			Esr1 L540Q (stable)
SRR5274993	H. sapiens	cell line	MDA-MB-231			Esr1 L540Q (stable)

Conditions

Sample name	Condition type	Treatment	Start time	End time	Duration
SRR5274970	vehicle	ethanol	-45 min	0 min	45 min
SRR5274971	vehicle	ethanol	-45 min	0 min	45 min
SRR5274972	vehicle	ethanol	-45 min	0 min	45 min
SRR5274973	vehicle	ethanol	-45 min	0 min	45 min
SRR5274974	treatment	17-beta-estradiol (100 nM)	-20 min	0 min	20 min
SRR5274975	treatment	17-beta-estradiol (100 nM)	-20 min	0 min	20 min
SRR5274976	treatment	17-beta-estradiol (100 nM)	-20 min	0 min	20 min
SRR5274977	treatment	17-beta-estradiol (100 nM)	-20 min	0 min	20 min
SRR5274978	treatment	17-beta-estradiol (100 nM)	-45 min	0 min	45 min
SRR5274979	treatment	17-beta-estradiol (100 nM)	-45 min	0 min	45 min
SRR5274980	treatment	17-beta-estradiol (100 nM)	-45 min	0 min	45 min
SRR5274981	treatment	17-beta-estradiol (100 nM)	-45 min	0 min	45 min
SRR5274982	vehicle	ethanol	-45 min	0 min	45 min
SRR5274983	vehicle	ethanol	-45 min	0 min	45 min
SRR5274984	vehicle	ethanol	-45 min	0 min	45 min
SRR5274985	vehicle	ethanol	-45 min	0 min	45 min
SRR5274986	treatment	17-beta-estradiol (100 nM)	-20 min	0 min	20 min
SRR5274987	treatment	17-beta-estradiol (100 nM)	-20 min	0 min	20 min
SRR5274988	treatment	17-beta-estradiol (100 nM)	-20 min	0 min	20 min
SRR5274989	treatment	17-beta-estradiol (100 nM)	-20 min	0 min	20 min
SRR5274990	treatment	17-beta-estradiol (100 nM)	-45 min	0 min	45 min
SRR5274991	treatment	17-beta-estradiol (100 nM)	-45 min	0 min	45 min
SRR5274992	treatment	17-beta-estradiol (100 nM)	-45 min	0 min	45 min
SRR5274993	treatment	17-beta-estradiol (100 nM)	-45 min	0 min	45 min

Sample metrics

Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR5274970	51	13,242,217	0.38172	0.4952	3.88701	0.59203	4	2
SRR5274971	51	22,048,380	0.30751	0.7795	3.1578	0.71545	1	2
SRR5274972	51	18,446,002	0.42486	0.4956	3.91949	0.56721	3	2
SRR5274973	51	32,872,932	0.35104	0.7748	3.18496	0.69895	1	2
SRR5274974	51	14,121,279	0.35703	0.4603	3.45161	0.61582	4	2
SRR5274975	51	15,127,015	0.3306	0.8622	1.66976	0.69631	2	1
SRR5274976	51	21,170,291	0.40031	0.4595	3.47566	0.59431	3	2
SRR5274977	51	24,165,480	0.40868	0.8438	1.67195	0.687	1	1
SRR5274978	51	19,239,829	0.42857	0.5139	3.70455	0.56632	3	2
SRR5274979	51	16,669,873	0.35458	0.7443	3.35122	0.65978	2	2
SRR5274980	51	28,366,443	0.47618	0.5157	3.71237	0.53884	2	2
SRR5274981	51	26,729,247	0.42499	0.7355	3.45307	0.63381	1	2
SRR5274982	51	16,608,882	0.55195	0.4006	3.52703	0.43119	4	2
SRR5274983	51	16,088,884	0.38762	0.7605	2.70619	0.61671	2	1
SRR5274984	51	27,262,793	0.61147	0.4142	3.41202	0.39183	3	2
SRR5274985	51	27,721,922	0.43911	0.7511	2.66928	0.59649	1	1
SRR5274986	51	11,236,232	0.57451	0.2471	2.85	0.36118	5	1
SRR5274987	51	18,882,091	0.41899	0.5894	3.32012	0.58088	3	2
SRR5274988	51	17,030,797	0.6361	0.2575	2.73563	0.32851	4	1
SRR5274989	51	29,455,086	0.47174	0.5776	3.32495	0.55211	1	2
SRR5274990	51	22,043,224	0.57886	0.3122	3.31973	0.40616	4	2
SRR5274991	51	17,321,551	0.4442	0.4301	3.37619	0.53449	4	2
SRR5274992	51	32,058,468	0.62442	0.3226	3.20192	0.37537	3	2
SRR5274993	51	27,986,486	0.50067	0.4197	3.36624	0.50592	3	2

Bidirectionals

Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR5274970	24086	9925	9253	5117	16563	8098	5504	3298
SRR5274971	38962	12902	15890	10456	27488	8670	11332	7387
SRR5274972	28797	11614	11220	6277	19112	8601	6653	4103
SRR5274973	44850	15014	18004	12475	32798	8751	14127	9434
SRR5274974	22378	9077	8765	4616	15520	7866	5153	2902
SRR5274975	32426	8014	16147	7245	20694	7233	8720	4796
SRR5274976	27960	11046	10956	6127	18716	8467	6581	3864
SRR5274977	39022	10105	19028	9024	28812	8528	13060	7113
SRR5274978	21109	9684	8011	3754	15786	8458	5253	2487
SRR5274979	27390	11312	10984	5632	19410	8644	7144	3869
SRR5274980	24997	11531	9423	4601	18190	8715	6490	3212
SRR5274981	32904	13764	12588	7138	23306	8857	9181	5232
SRR5274982	15844	7115	6094	2684	10824	6437	3234	1558
SRR5274983	29253	9812	12712	7003	20435	7782	8193	4627
SRR5274984	21262	9197	8283	3908	14356	7507	4714	2353
SRR5274985	36461	12271	15572	9169	26483	8383	11361	6669
SRR5274986	5962	2952	2098	860	3205	2131	850	393
SRR5274987	25666	9747	10765	5403	18520	8226	6975	3611
SRR5274988	8883	4384	3282	1266	5318	3509	1438	626
SRR5274989	30805	11803	12629	6893	22481	8664	8991	4880
SRR5274990	13853	7197	5065	1739	9589	6266	2642	998
SRR5274991	17759	8188	7048	2906	13244	7610	4256	1803
SRR5274992	17214	8900	6431	2253	11786	7141	3521	1365
SRR5274993	22849	10525	9055	3925	16648	8448	5842	2702