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SRR6069044,SRR6069045,SRR7290015,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRR6069044 | 1982 | Oh2021enhancer | GRO-seq | circularization | experimental | False | 3 | 1 |
| SRR6069045 | 1983 | Oh2021enhancer | GRO-seq | circularization | experimental | False | 2 | 1 |
| SRR7290015 | 1984 | Oh2021enhancer | GRO-seq | circularization | control | False | 3 | 1 |
| SRR7290016 | 1985 | Oh2021enhancer | GRO-seq | circularization | experimental | False | 3 | 1 |
| SRR7290017 | 1986 | Oh2021enhancer | GRO-seq | circularization | experimental | False | 2 | 1 |
| SRR7290018 | 1987 | Oh2021enhancer | GRO-seq | circularization | experimental | False | 2 | 1 |
| SRR7290019 | 1988 | Oh2021enhancer | GRO-seq | circularization | control | False | 2 | 2 |
| SRR7290020 | 1989 | Oh2021enhancer | GRO-seq | circularization | experimental | False | 2 | 2 |
| SRR7290021 | 1990 | Oh2021enhancer | GRO-seq | circularization | experimental | False | 2 | 2 |
| SRR7290022 | 1991 | Oh2021enhancer | GRO-seq | circularization | experimental | False | 2 | 2 |
| SRR7290023 | 1992 | Oh2021enhancer | GRO-seq | circularization | control | False | 3 | 3 |
| SRR7290024 | 1993 | Oh2021enhancer | GRO-seq | circularization | experimental | False | 4 | 3 |
| SRR7290025 | 1994 | Oh2021enhancer | GRO-seq | circularization | experimental | False | 4 | 3 |
| SRR7290026 | 1995 | Oh2021enhancer | GRO-seq | circularization | experimental | False | 3 | 3 |
| SRR7290027 | 1996 | Oh2021enhancer | GRO-seq | circularization | control | True | 2 | 1 |
| SRR7290028 | 1997 | Oh2021enhancer | GRO-seq | circularization | experimental | False | 2 | 1 |
| SRR7290029 | 1998 | Oh2021enhancer | GRO-seq | circularization | experimental | False | 3 | 1 |
| SRR7290030 | 1999 | Oh2021enhancer | GRO-seq | circularization | experimental | False | 2 | 1 |
| SRR7290031 | 2000 | Oh2021enhancer | GRO-seq | circularization | experimental | False | 2 | 1 |
| SRR7290032 | 2001 | Oh2021enhancer | GRO-seq | circularization | experimental | False | 2 | 1 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR6069044 | H. sapiens | cell line | MCF7 | siRNA Kdm5c | |||
| SRR6069045 | H. sapiens | cell line | MCF7 | siRNA Kdm5c | |||
| SRR7290015 | H. sapiens | cell line | MCF7 | siRNA control | |||
| SRR7290016 | H. sapiens | cell line | MCF7 | siRNA control | |||
| SRR7290017 | H. sapiens | cell line | MCF7 | siRNA Rad21 | |||
| SRR7290018 | H. sapiens | cell line | MCF7 | siRNA Rad21 | |||
| SRR7290019 | H. sapiens | cell line | MCF7 | siRNA control | |||
| SRR7290020 | H. sapiens | cell line | MCF7 | siRNA control | |||
| SRR7290021 | H. sapiens | cell line | MCF7 | siRNA Rad21 | |||
| SRR7290022 | H. sapiens | cell line | MCF7 | siRNA Rad21 | |||
| SRR7290023 | H. sapiens | cell line | MCF7 | siRNA control | |||
| SRR7290024 | H. sapiens | cell line | MCF7 | siRNA control | |||
| SRR7290025 | H. sapiens | cell line | MCF7 | siRNA Rad21 | |||
| SRR7290026 | H. sapiens | cell line | MCF7 | siRNA Rad21 | |||
| SRR7290027 | H. sapiens | cell line | MCF7 | ||||
| SRR7290028 | H. sapiens | cell line | MCF7 | ||||
| SRR7290029 | H. sapiens | cell line | MCF7 | clone 28 | Tff1 promoter -/- | ||
| SRR7290030 | H. sapiens | cell line | MCF7 | clone 28 | Tff1 promoter -/- | ||
| SRR7290031 | H. sapiens | cell line | MCF7 | clone 25 | Tff1 promoter -/- | ||
| SRR7290032 | H. sapiens | cell line | MCF7 | clone 25 | Tff1 promoter -/- |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR6069044 | vehicle | ethanol | -1 hr | 0 hr | 1 hr |
| SRR6069045 | treatment | 17-beta-estradiol (100 nM) | -1 hr | 0 hr | 1 hr |
| SRR7290015 | vehicle | ethanol | -1 hr | 0 hr | 1 hr |
| SRR7290016 | treatment | 17-beta-estradiol (100 nM) | -1 hr | 0 hr | 1 hr |
| SRR7290017 | vehicle | ethanol | -1 hr | 0 hr | 1 hr |
| SRR7290018 | treatment | 17-beta-estradiol (100 nM) | -1 hr | 0 hr | 1 hr |
| SRR7290019 | vehicle | ethanol | -1 hr | 0 hr | 1 hr |
| SRR7290020 | treatment | 17-beta-estradiol (100 nM) | -1 hr | 0 hr | 1 hr |
| SRR7290021 | vehicle | ethanol | -1 hr | 0 hr | 1 hr |
| SRR7290022 | treatment | 17-beta-estradiol (100 nM) | -1 hr | 0 hr | 1 hr |
| SRR7290023 | vehicle | ethanol | -1 hr | 0 hr | 1 hr |
| SRR7290024 | treatment | 17-beta-estradiol (100 nM) | -1 hr | 0 hr | 1 hr |
| SRR7290025 | vehicle | ethanol | -1 hr | 0 hr | 1 hr |
| SRR7290026 | treatment | 17-beta-estradiol (100 nM) | -1 hr | 0 hr | 1 hr |
| SRR7290027 | vehicle | ethanol | -1 hr | 0 hr | 1 hr |
| SRR7290028 | treatment | 17-beta-estradiol (100 nM) | -1 hr | 0 hr | 1 hr |
| SRR7290029 | vehicle | ethanol | -1 hr | 0 hr | 1 hr |
| SRR7290030 | treatment | 17-beta-estradiol (100 nM) | -1 hr | 0 hr | 1 hr |
| SRR7290031 | vehicle | ethanol | -1 hr | 0 hr | 1 hr |
| SRR7290032 | treatment | 17-beta-estradiol (100 nM) | -1 hr | 0 hr | 1 hr |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR6069044 | 50 | 30,986,028 | 0.66267 | 0.9221 | 3.70265 | 0.36767 | 3 | 2 |
| SRR6069045 | 50 | 26,713,484 | 0.60372 | 0.9264 | 3.08249 | 0.43669 | 2 | 2 |
| SRR7290015 | 50 | 27,779,374 | 0.68522 | 0.9285 | 3.65923 | 0.34307 | 3 | 2 |
| SRR7290016 | 50 | 30,685,428 | 0.69618 | 0.9241 | 3.5763 | 0.34518 | 3 | 2 |
| SRR7290017 | 50 | 25,739,056 | 0.59403 | 0.9263 | 2.78595 | 0.45843 | 2 | 1 |
| SRR7290018 | 50 | 24,420,837 | 0.63967 | 0.9259 | 3.42585 | 0.38496 | 2 | 2 |
| SRR7290019 | 50 | 34,272,503 | 0.60178 | 0.926 | 3.21046 | 0.44265 | 2 | 2 |
| SRR7290020 | 50 | 39,710,457 | 0.62348 | 0.9249 | 3.05332 | 0.41351 | 2 | 2 |
| SRR7290021 | 50 | 40,285,433 | 0.53926 | 0.9195 | 3.06033 | 0.50275 | 2 | 2 |
| SRR7290022 | 50 | 43,708,325 | 0.53104 | 0.9186 | 3.0572 | 0.51146 | 2 | 2 |
| SRR7290023 | 100 | 42,818,133 | 0.75151 | 0.6655 | 4.36404 | 0.27131 | 3 | 2 |
| SRR7290024 | 100 | 45,357,569 | 0.80132 | 0.6619 | 5.30693 | 0.21897 | 4 | 3 |
| SRR7290025 | 100 | 44,938,362 | 0.84772 | 0.6494 | 5.75466 | 0.16782 | 4 | 3 |
| SRR7290026 | 100 | 72,172,187 | 0.73966 | 0.6207 | 3.69627 | 0.29831 | 3 | 2 |
| SRR7290027 | 50 | 43,798,933 | 0.58878 | 0.8725 | 3.33398 | 0.49926 | 2 | 2 |
| SRR7290028 | 50 | 42,464,948 | 0.56968 | 0.8979 | 3.4097 | 0.47306 | 2 | 2 |
| SRR7290029 | 50 | 47,891,521 | 0.67858 | 0.9108 | 3.84346 | 0.35378 | 3 | 2 |
| SRR7290030 | 50 | 38,931,982 | 0.54236 | 0.9145 | 3.30416 | 0.49645 | 2 | 2 |
| SRR7290031 | 50 | 57,763,885 | 0.51419 | 0.8958 | 2.99043 | 0.54856 | 2 | 1 |
| SRR7290032 | 50 | 53,166,714 | 0.52645 | 0.8945 | 3.07213 | 0.53066 | 2 | 2 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR6069044 | 23588 | 11068 | 8912 | 3817 | 18057 | 8920 | 6274 | 3171 |
| SRR6069045 | 20575 | 9728 | 7794 | 3167 | 15150 | 7777 | 5119 | 2535 |
| SRR7290015 | 18932 | 9425 | 7079 | 2538 | 14552 | 8042 | 4666 | 2174 |
| SRR7290016 | 18508 | 9347 | 6899 | 2412 | 14247 | 7843 | 4640 | 2081 |
| SRR7290017 | 18626 | 8239 | 7204 | 2926 | 13555 | 7042 | 4527 | 2325 |
| SRR7290018 | 19627 | 9117 | 7489 | 3050 | 14451 | 7762 | 4723 | 2341 |
| SRR7290019 | 21712 | 9405 | 8105 | 4108 | 15786 | 7511 | 5453 | 3124 |
| SRR7290020 | 20260 | 9299 | 7580 | 3282 | 15271 | 7594 | 5269 | 2696 |
| SRR7290021 | 25011 | 10135 | 9681 | 5181 | 19823 | 8330 | 7609 | 4207 |
| SRR7290022 | 23747 | 9704 | 9206 | 4664 | 18744 | 7945 | 7156 | 3885 |
| SRR7290023 | 10997 | 4542 | 4276 | 1157 | 6512 | 3952 | 1796 | 858 |
| SRR7290024 | 9227 | 3629 | 3600 | 619 | 4751 | 2858 | 1308 | 568 |
| SRR7290025 | 7133 | 2421 | 2888 | 349 | 2909 | 1649 | 927 | 346 |
| SRR7290026 | 17524 | 7559 | 6878 | 2430 | 12991 | 6999 | 4306 | 1990 |
| SRR7290027 | 23617 | 10034 | 9293 | 4238 | 19606 | 8849 | 7431 | 3632 |
| SRR7290028 | 23981 | 10735 | 9325 | 4037 | 19533 | 8683 | 7557 | 3550 |
| SRR7290029 | 23236 | 11322 | 8500 | 3520 | 18392 | 8639 | 6726 | 3291 |
| SRR7290030 | 27291 | 12529 | 10353 | 4744 | 21438 | 8847 | 8585 | 4147 |
| SRR7290031 | 29145 | 12599 | 10896 | 5919 | 25083 | 9197 | 10510 | 5577 |
| SRR7290032 | 27196 | 11961 | 10496 | 4924 | 22692 | 8740 | 9422 | 4621 |
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