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SRR2153508,SRR2153509,SRR2153510,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRR2153508 | 2131 | Salony2016akt | GRO-seq | ligation | experimental | False | 5 | 1 |
| SRR2153509 | 2132 | Salony2016akt | GRO-seq | ligation | experimental | False | 5 | 2 |
| SRR2153510 | 2133 | Salony2016akt | GRO-seq | ligation | control | True | 5 | 1 |
| SRR2153511 | 2134 | Salony2016akt | GRO-seq | ligation | control | True | 5 | 2 |
| SRR2153512 | 2135 | Salony2016akt | GRO-seq | ligation | experimental | False | 5 | 1 |
| SRR2153513 | 2136 | Salony2016akt | GRO-seq | ligation | experimental | False | 4 | 2 |
| SRR2153514 | 2137 | Salony2016akt | GRO-seq | ligation | control | True | 5 | 1 |
| SRR2153515 | 2138 | Salony2016akt | GRO-seq | ligation | control | True | 5 | 2 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR2153508 | H. sapiens | cell line | MCF7 | ||||
| SRR2153509 | H. sapiens | cell line | MCF7 | ||||
| SRR2153510 | H. sapiens | cell line | MCF7 | ||||
| SRR2153511 | H. sapiens | cell line | MCF7 | ||||
| SRR2153512 | H. sapiens | cell line | HCT116 | ||||
| SRR2153513 | H. sapiens | cell line | HCT116 | ||||
| SRR2153514 | H. sapiens | cell line | HCT116 | ||||
| SRR2153515 | H. sapiens | cell line | HCT116 |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR2153508 | treatment | AKTi-1/2 (2 microM) | -72 hr | 0 hr | 3 day |
| SRR2153509 | treatment | AKTi-1/2 (2 microM) | -72 hr | 0 hr | 3 day |
| SRR2153510 | vehicle | DMSO | -72 hr | 0 hr | 3 day |
| SRR2153511 | vehicle | DMSO | -72 hr | 0 hr | 3 day |
| SRR2153512 | treatment | AKTi-1/2 (20 microM) | -72 hr | 0 hr | 3 day |
| SRR2153513 | treatment | AKTi-1/2 (20 microM) | -72 hr | 0 hr | 3 day |
| SRR2153514 | vehicle | DMSO | -72 hr | 0 hr | 3 day |
| SRR2153515 | vehicle | DMSO | -72 hr | 0 hr | 3 day |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR2153508 | 50 | 93,416,741 | 0.95591 | 0.5326 | 1.71421 | 0.11308 | 5 | 3 |
| SRR2153509 | 50 | 87,679,478 | 0.96596 | 0.6926 | 1.40394 | 0.13509 | 5 | 5 |
| SRR2153510 | 50 | 100,905,805 | 0.98705 | 0.3812 | 1.02978 | 0.03427 | 5 | 5 |
| SRR2153511 | 50 | 89,759,559 | 0.96511 | 0.7412 | 1.73398 | 0.15245 | 5 | 5 |
| SRR2153512 | 50 | 87,701,519 | 0.95117 | 0.4549 | 1.50592 | 0.10635 | 5 | 3 |
| SRR2153513 | 50 | 91,451,663 | 0.92976 | 0.6452 | 1.67594 | 0.24695 | 4 | 5 |
| SRR2153514 | 50 | 12,585,446 | 0.94826 | 0.4368 | 0.99078 | 0.03513 | 5 | 5 |
| SRR2153515 | 50 | 174,322,983 | 0.99457 | 0.7993 | 0.37443 | 0.0352 | 5 | 5 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR2153508 | 1336 | 262 | 843 | 116 | 2116 | 80 | 1518 | 258 |
| SRR2153509 | 962 | 84 | 681 | 88 | 3111 | 44 | 2400 | 355 |
| SRR2153510 | 66 | 15 | 49 | 3 | 316 | 4 | 233 | 33 |
| SRR2153511 | 1227 | 128 | 890 | 123 | 4499 | 68 | 3545 | 492 |
| SRR2153512 | 1571 | 300 | 1019 | 143 | 1482 | 70 | 1056 | 171 |
| SRR2153513 | 3027 | 204 | 2135 | 357 | 11034 | 145 | 8401 | 1512 |
| SRR2153514 | 52 | 5 | 37 | 2 | 229 | 4 | 169 | 25 |
| SRR2153515 | 135 | 33 | 102 | 5 | 760 | 15 | 594 | 84 |
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