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SRR8992356,SRR8992357,SRR8992358,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRR8992356 | 2347 | Stengel2019histone | PRO-seq | ligation | control | True | 3 | 2 |
| SRR8992357 | 2348 | Stengel2019histone | PRO-seq | ligation | experimental | False | 2 | 1 |
| SRR8992358 | 2349 | Stengel2019histone | PRO-seq | ligation | control | True | 3 | 1 |
| SRR8992359 | 2350 | Stengel2019histone | PRO-seq | ligation | experimental | False | 2 | 1 |
| SRR8992360 | 2351 | Stengel2019histone | PRO-seq | ligation | control | True | 2 | 1 |
| SRR8992361 | 2352 | Stengel2019histone | PRO-seq | ligation | experimental | False | 3 | 2 |
| SRR8992362 | 2353 | Stengel2019histone | PRO-seq | ligation | control | True | 3 | 2 |
| SRR8992363 | 2354 | Stengel2019histone | PRO-seq | ligation | experimental | False | 3 | 2 |
| SRR8992364 | 2355 | Stengel2019histone | PRO-seq | ligation | control | True | 2 | 1 |
| SRR8992365 | 2356 | Stengel2019histone | PRO-seq | ligation | control | True | 2 | 2 |
| SRR8992366 | 2357 | Stengel2019histone | PRO-seq | ligation | experimental | False | 2 | 1 |
| SRR8992367 | 2358 | Stengel2019histone | PRO-seq | ligation | experimental | False | 2 | 2 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR8992356 | H. sapiens | cell line | SUDHL4 | ||||
| SRR8992357 | H. sapiens | cell line | SUDHL4 | ||||
| SRR8992358 | H. sapiens | cell line | NUDUL1 | ||||
| SRR8992359 | H. sapiens | cell line | NUDUL1 | ||||
| SRR8992360 | H. sapiens | cell line | SUDHL4 | ||||
| SRR8992361 | H. sapiens | cell line | SUDHL4 | ||||
| SRR8992362 | H. sapiens | cell line | NUDUL1 | ||||
| SRR8992363 | H. sapiens | cell line | NUDUL1 | ||||
| SRR8992364 | H. sapiens | cell line | OCILY1 | ||||
| SRR8992365 | H. sapiens | cell line | OCILY1 | ||||
| SRR8992366 | H. sapiens | cell line | OCILY1 | ||||
| SRR8992367 | H. sapiens | cell line | OCILY1 |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR8992356 | vehicle | DMSO | -3 hr | 0 hr | 3 hr |
| SRR8992357 | treatment | RGFP966 (10 microM) | -3 hr | 0 hr | 3 hr |
| SRR8992358 | vehicle | DMSO | -3 hr | 0 hr | 3 hr |
| SRR8992359 | treatment | RGFP966 (10 microM) | -3 hr | 0 hr | 3 hr |
| SRR8992360 | vehicle | DMSO | -3 hr | 0 hr | 3 hr |
| SRR8992361 | treatment | RGFP966 (10 microM) | -3 hr | 0 hr | 3 hr |
| SRR8992362 | vehicle | DMSO | -3 hr | 0 hr | 3 hr |
| SRR8992363 | treatment | RGFP966 (10 microM) | -3 hr | 0 hr | 3 hr |
| SRR8992364 | vehicle | DMSO | -3 hr | 0 hr | 3 hr |
| SRR8992365 | vehicle | DMSO | -3 hr | 0 hr | 3 hr |
| SRR8992366 | treatment | RGFP966 (10 microM) | -3 hr | 0 hr | 3 hr |
| SRR8992367 | treatment | RGFP966 (10 microM) | -3 hr | 0 hr | 3 hr |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR8992356 | 75 | 92,451,894 | 0.66315 | 0.8715 | 3.18349 | 0.6084 | 3 | 2 |
| SRR8992357 | 75 | 88,890,152 | 0.6381 | 0.8643 | 3.08683 | 0.62202 | 2 | 2 |
| SRR8992358 | 75 | 88,321,715 | 0.66002 | 0.8708 | 3.22595 | 0.61504 | 3 | 2 |
| SRR8992359 | 75 | 74,106,048 | 0.63502 | 0.8605 | 3.25198 | 0.60477 | 2 | 2 |
| SRR8992360 | 75 | 74,139,679 | 0.63372 | 0.8705 | 3.32927 | 0.61139 | 2 | 2 |
| SRR8992361 | 75 | 66,698,954 | 0.68175 | 0.8755 | 3.02806 | 0.56299 | 3 | 2 |
| SRR8992362 | 75 | 83,666,481 | 0.65079 | 0.8791 | 3.24078 | 0.61213 | 3 | 2 |
| SRR8992363 | 75 | 79,299,738 | 0.65551 | 0.8635 | 3.21607 | 0.59826 | 3 | 2 |
| SRR8992364 | 51 | 41,897,356 | 0.50594 | 0.8377 | 3.37579 | 0.64395 | 2 | 2 |
| SRR8992365 | 51 | 44,516,585 | 0.5413 | 0.8273 | 3.37241 | 0.62393 | 2 | 2 |
| SRR8992366 | 51 | 51,011,232 | 0.52866 | 0.8561 | 3.06679 | 0.64914 | 2 | 2 |
| SRR8992367 | 51 | 45,342,941 | 0.54001 | 0.8317 | 3.14616 | 0.621 | 2 | 2 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR8992356 | 37230 | 11040 | 17523 | 7966 | 34886 | 8085 | 17278 | 8594 |
| SRR8992357 | 44600 | 11751 | 20435 | 11469 | 39879 | 8664 | 19384 | 10971 |
| SRR8992358 | 31769 | 10962 | 14604 | 5892 | 32094 | 7942 | 15585 | 7612 |
| SRR8992359 | 38527 | 11223 | 17239 | 9026 | 33746 | 8758 | 15175 | 8896 |
| SRR8992360 | 36344 | 10948 | 16969 | 7654 | 31369 | 8091 | 15239 | 7308 |
| SRR8992361 | 38004 | 9844 | 17963 | 8878 | 29236 | 8501 | 13411 | 6946 |
| SRR8992362 | 32417 | 10967 | 14928 | 6072 | 30673 | 7886 | 14717 | 7057 |
| SRR8992363 | 38667 | 11151 | 17445 | 9009 | 34094 | 8657 | 15474 | 9013 |
| SRR8992364 | 30104 | 12121 | 12695 | 5244 | 23288 | 8251 | 10187 | 4611 |
| SRR8992365 | 29696 | 12060 | 12464 | 5076 | 22994 | 8254 | 9998 | 4520 |
| SRR8992366 | 33578 | 12230 | 14191 | 6976 | 28398 | 8760 | 12969 | 6484 |
| SRR8992367 | 32660 | 11681 | 14094 | 6552 | 26379 | 8755 | 11694 | 5845 |
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