DBNascent | Samples

SRZ1950491,SRZ1950493,SRZ1950495,...

**Downloads**
Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
ZIP archive	ZIP archive	ZIP archive	ZIP archive
For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

**Technical details**
Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRZ1950491	2458	Teppo2016genome	GRO-seq	circularization	control	False	2	1
SRZ1950493	2459	Teppo2016genome	GRO-seq	circularization	control	False	2	2
SRZ1950495	2460	Teppo2016genome	GRO-seq	circularization	control	False	2	1
SRZ1950497	2461	Teppo2016genome	GRO-seq	circularization	control	False	3	2
SRZ1950499	2462	Teppo2016genome	GRO-seq	circularization	experimental	False	2	1
SRZ1950501	2463	Teppo2016genome	GRO-seq	circularization	experimental	False	2	2
SRZ1950503	2464	Teppo2016genome	GRO-seq	circularization	experimental	False	2	1
SRZ1950505	2465	Teppo2016genome	GRO-seq	circularization	experimental	False	2	2
SRZ1950507	2466	Teppo2016genome	GRO-seq	circularization	experimental	False	2	1
SRZ1950509	2467	Teppo2016genome	GRO-seq	circularization	experimental	False	2	2
SRZ1950511	2468	Teppo2016genome	GRO-seq	circularization	experimental	False	2	1
SRZ1950513	2469	Teppo2016genome	GRO-seq	circularization	experimental	False	2	2

**Cellular details**
Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRZ1950491	H. sapiens	cell line	Nalm6			dox-inducible luciferase (stable)
SRZ1950493	H. sapiens	cell line	Nalm6			dox-inducible luciferase (stable)
SRZ1950495	H. sapiens	cell line	Nalm6			dox-inducible Etv6-Runx1 fusion (stable)
SRZ1950497	H. sapiens	cell line	Nalm6			dox-inducible Etv6-Runx1 fusion (stable)
SRZ1950499	H. sapiens	cell line	Nalm6			dox-inducible Etv6-Runx1 fusion (stable)
SRZ1950501	H. sapiens	cell line	Nalm6			dox-inducible Etv6-Runx1 fusion (stable)
SRZ1950503	H. sapiens	cell line	Nalm6			dox-inducible Etv6-Runx1 fusion (stable)
SRZ1950505	H. sapiens	cell line	Nalm6			dox-inducible Etv6-Runx1 fusion (stable)
SRZ1950507	H. sapiens	cell line	Nalm6			dox-inducible Etv6-Runx1 fusion (stable)
SRZ1950509	H. sapiens	cell line	Nalm6			dox-inducible Etv6-Runx1 fusion (stable)
SRZ1950511	H. sapiens	cell line	Nalm6			dox-inducible Etv6-Runx1 fusion R518Q (stable)
SRZ1950513	H. sapiens	cell line	Nalm6			dox-inducible Etv6-Runx1 fusion R518Q (stable)

**Conditions**
Sample name	Condition type	Treatment	Start time	End time	Duration
SRZ1950491	treatment	doxycycline (500 ng/mL)	-24 hr	0 hr	1 day
SRZ1950493	treatment	doxycycline (500 ng/mL)	-24 hr	0 hr	1 day
SRZ1950495	no treatment		None	None	None
SRZ1950497	no treatment		None	None	None
SRZ1950499	treatment	doxycycline (500 ng/mL)	-4 hr	0 hr	4 hr
SRZ1950501	treatment	doxycycline (500 ng/mL)	-4 hr	0 hr	4 hr
SRZ1950503	treatment	doxycycline (500 ng/mL)	-12 hr	0 hr	12 hr
SRZ1950505	treatment	doxycycline (500 ng/mL)	-12 hr	0 hr	12 hr
SRZ1950507	treatment	doxycycline (500 ng/mL)	-24 hr	0 hr	1 day
SRZ1950509	treatment	doxycycline (500 ng/mL)	-24 hr	0 hr	1 day
SRZ1950511	treatment	doxycycline (500 ng/mL)	-24 hr	0 hr	1 day
SRZ1950513	treatment	doxycycline (500 ng/mL)	-24 hr	0 hr	1 day

**Sample metrics**
Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRZ1950491	51	36,738,597	0.51557	0.9166	3.93548	0.52816	2	2
SRZ1950493	51	35,468,697	0.58953	0.9375	3.76923	0.49388	2	2
SRZ1950495	51	26,367,294	0.54284	0.9298	3.67883	0.50225	2	2
SRZ1950497	51	33,924,599	0.67756	0.934	3.81583	0.36718	3	2
SRZ1950499	51	37,334,662	0.55836	0.9266	3.49186	0.48632	2	2
SRZ1950501	51	33,403,322	0.56909	0.9259	3.52375	0.48869	2	2
SRZ1950503	51	35,586,936	0.58224	0.9214	4.00956	0.47026	2	2
SRZ1950505	51	39,414,213	0.63606	0.9253	4.3544	0.40398	2	2
SRZ1950507	51	36,914,982	0.51406	0.9157	3.60102	0.5422	2	2
SRZ1950509	51	35,413,231	0.63015	0.9329	4.21684	0.42014	2	2
SRZ1950511	51	31,746,938	0.5166	0.932	3.93455	0.5267	2	2
SRZ1950513	51	26,289,584	0.60067	0.9249	4.16364	0.43713	2	2

**Bidirectionals**
Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRZ1950491	29110	14011	10851	5088	21320	7778	8685	4330
SRZ1950493	24040	10949	9419	4042	19568	8219	7763	3622
SRZ1950495	25720	10158	10694	4745	16910	6639	6851	3207
SRZ1950497	21972	9908	8703	3280	14871	6896	5458	2303
SRZ1950499	28978	12279	11171	5711	19663	7028	8123	4097
SRZ1950501	25125	10619	10032	4555	17570	7341	6865	3342
SRZ1950503	26802	11962	10581	4562	18844	7502	7488	3581
SRZ1950505	26467	12166	10290	4436	19272	7810	7591	3634
SRZ1950507	28336	12810	10694	5295	20713	7815	8210	4333
SRZ1950509	22560	9359	8970	4327	18261	7736	6908	3693
SRZ1950511	25584	12690	9568	4118	20066	8063	8129	3736
SRZ1950513	18160	8380	7327	2555	15562	7772	5671	2390