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Sample Details

SRR7868785,SRR7868786,SRR7868787,...
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Technical details
Sample name Sample ID Paper identifier Protocol Library prep Control/Experimental Wildtype & Untreated QC score Replicate
SRR7868785 2686 Xiao2019pervasive GRO-seq circularization control False 4 1
SRR7868786 2687 Xiao2019pervasive GRO-seq circularization control False 4 2
SRR7868787 2688 Xiao2019pervasive GRO-seq circularization experimental False 4 1
SRR7868788 2689 Xiao2019pervasive GRO-seq circularization experimental False 4 2
SRR7868789 2690 Xiao2019pervasive GRO-seq circularization experimental False 4 1
SRR7868790 2691 Xiao2019pervasive GRO-seq circularization experimental False 4 2
SRR7868791 2692 Xiao2019pervasive GRO-seq circularization experimental False 4 1
SRR7868792 2693 Xiao2019pervasive GRO-seq circularization experimental False 4 2
SRR7868793 2694 Xiao2019pervasive GRO-seq circularization experimental False 4 1
SRR7868794 2695 Xiao2019pervasive GRO-seq circularization experimental False 4 2
SRR7868795 2696 Xiao2019pervasive GRO-seq circularization experimental False 4 1
SRR7868796 2697 Xiao2019pervasive GRO-seq circularization experimental False 4 2
SRR7868797 2698 Xiao2019pervasive GRO-seq circularization experimental False 4 1
SRR7868798 2699 Xiao2019pervasive GRO-seq circularization experimental False 4 2
SRR7868799 2700 Xiao2019pervasive GRO-seq circularization control False 3 3
SRR7868800 2701 Xiao2019pervasive GRO-seq circularization control False 3 4
SRR7868801 2702 Xiao2019pervasive GRO-seq circularization experimental False 4 1
SRR7868802 2703 Xiao2019pervasive GRO-seq circularization experimental False 4 2
SRR7868803 2704 Xiao2019pervasive GRO-seq circularization experimental False 4 1
SRR7868804 2705 Xiao2019pervasive GRO-seq circularization experimental False 4 2
SRR7868805 2706 Xiao2019pervasive GRO-seq circularization experimental False 3 1
SRR7868806 2707 Xiao2019pervasive GRO-seq circularization experimental False 3 2
SRR7868807 2708 Xiao2019pervasive GRO-seq circularization experimental False 4 1
SRR7868808 2709 Xiao2019pervasive GRO-seq circularization experimental False 3 2
SRR7868809 2710 Xiao2019pervasive GRO-seq circularization experimental False 3 1
SRR7868810 2711 Xiao2019pervasive GRO-seq circularization experimental False 3 2
SRR7868811 2712 Xiao2019pervasive GRO-seq circularization experimental False 4 1
SRR7868812 2713 Xiao2019pervasive GRO-seq circularization experimental False 4 2
SRR7868813 2714 Xiao2019pervasive GRO-seq circularization experimental False 3 1
SRR7868814 2715 Xiao2019pervasive GRO-seq circularization experimental False 3 2
SRR7868815 2716 Xiao2019pervasive GRO-seq circularization experimental False 3 1
SRR7868816 2717 Xiao2019pervasive GRO-seq circularization experimental False 3 2
SRR7868817 2718 Xiao2019pervasive GRO-seq circularization control False 4 5
SRR7868818 2719 Xiao2019pervasive GRO-seq circularization control False 4 6
SRR7868819 2720 Xiao2019pervasive GRO-seq circularization experimental False 4 1
SRR7868820 2721 Xiao2019pervasive GRO-seq circularization experimental False 4 2
SRR7868821 2722 Xiao2019pervasive GRO-seq circularization experimental False 4 3
SRR7868822 2723 Xiao2019pervasive GRO-seq circularization experimental False 4 4
Cellular details
Sample name Organism Sample type Cell type Clone/Individual Strain Genotype Construct
SRR7868785 H. sapiens cell line HepG2 siRNA control
SRR7868786 H. sapiens cell line HepG2 siRNA control
SRR7868787 H. sapiens cell line HepG2 siRNA Ago1
SRR7868788 H. sapiens cell line HepG2 siRNA Ago1
SRR7868789 H. sapiens cell line HepG2 siRNA Ago2
SRR7868790 H. sapiens cell line HepG2 siRNA Ago2
SRR7868791 H. sapiens cell line HepG2 siRNA Hnrnpl
SRR7868792 H. sapiens cell line HepG2 siRNA Hnrnpl
SRR7868793 H. sapiens cell line HepG2 siRNA Srsf4
SRR7868794 H. sapiens cell line HepG2 siRNA Srsf4
SRR7868795 H. sapiens cell line HepG2 siRNA U2af1
SRR7868796 H. sapiens cell line HepG2 siRNA U2af1
SRR7868797 H. sapiens cell line HepG2 siRNA U2af2
SRR7868798 H. sapiens cell line HepG2 siRNA U2af2
SRR7868799 H. sapiens cell line HepG2 siRNA control
SRR7868800 H. sapiens cell line HepG2 siRNA control
SRR7868801 H. sapiens cell line HepG2 siRNA Hnrnph1
SRR7868802 H. sapiens cell line HepG2 siRNA Hnrnph1
SRR7868803 H. sapiens cell line HepG2 siRNA Hnrnpk
SRR7868804 H. sapiens cell line HepG2 siRNA Hnrnpk
SRR7868805 H. sapiens cell line HepG2 siRNA Hnrnpll
SRR7868806 H. sapiens cell line HepG2 siRNA Hnrnpll
SRR7868807 H. sapiens cell line HepG2 siRNA Pcbp2
SRR7868808 H. sapiens cell line HepG2 siRNA Pcbp2
SRR7868809 H. sapiens cell line HepG2 siRNA Ptbp1
SRR7868810 H. sapiens cell line HepG2 siRNA Ptbp1
SRR7868811 H. sapiens cell line HepG2 siRNA Rbm22
SRR7868812 H. sapiens cell line HepG2 siRNA Rbm22
SRR7868813 H. sapiens cell line HepG2 siRNA Rbm25
SRR7868814 H. sapiens cell line HepG2 siRNA Rbm25
SRR7868815 H. sapiens cell line HepG2 siRNA Xrcc5
SRR7868816 H. sapiens cell line HepG2 siRNA Xrcc5
SRR7868817 H. sapiens cell line HepG2 siRNA control
SRR7868818 H. sapiens cell line HepG2 siRNA control
SRR7868819 H. sapiens cell line HepG2 siRNA Yy1
SRR7868820 H. sapiens cell line HepG2 siRNA Yy1
SRR7868821 H. sapiens cell line HepG2 siRNA Rbm25
SRR7868822 H. sapiens cell line HepG2 siRNA Rbm25
Conditions
Sample name Condition type Treatment Start time End time Duration
SRR7868785 no treatment None None None
SRR7868786 no treatment None None None
SRR7868787 no treatment None None None
SRR7868788 no treatment None None None
SRR7868789 no treatment None None None
SRR7868790 no treatment None None None
SRR7868791 no treatment None None None
SRR7868792 no treatment None None None
SRR7868793 no treatment None None None
SRR7868794 no treatment None None None
SRR7868795 no treatment None None None
SRR7868796 no treatment None None None
SRR7868797 no treatment None None None
SRR7868798 no treatment None None None
SRR7868799 no treatment None None None
SRR7868800 no treatment None None None
SRR7868801 no treatment None None None
SRR7868802 no treatment None None None
SRR7868803 no treatment None None None
SRR7868804 no treatment None None None
SRR7868805 no treatment None None None
SRR7868806 no treatment None None None
SRR7868807 no treatment None None None
SRR7868808 no treatment None None None
SRR7868809 no treatment None None None
SRR7868810 no treatment None None None
SRR7868811 no treatment None None None
SRR7868812 no treatment None None None
SRR7868813 no treatment None None None
SRR7868814 no treatment None None None
SRR7868815 no treatment None None None
SRR7868816 no treatment None None None
SRR7868817 no treatment None None None
SRR7868818 no treatment None None None
SRR7868819 no treatment None None None
SRR7868820 no treatment None None None
SRR7868821 no treatment None None None
SRR7868822 no treatment None None None
Sample metrics
Sample name Raw read length Trim read depth Duplication proportion Proportion reads mapped Exon/intron ratio Unique read proportion Sample QC score Sample NRO score
SRR7868785 40 6,565,982 0.82774 0.844 5.30137 0.15582 4 3
SRR7868786 40 10,811,919 0.82981 0.8799 4.93939 0.16894 4 2
SRR7868787 40 7,332,855 0.84151 0.8784 5.2716 0.14745 4 3
SRR7868788 40 9,841,618 0.83428 0.874 5.06034 0.16193 4 3
SRR7868789 40 9,107,271 0.82261 0.8929 5.43243 0.17226 4 3
SRR7868790 40 11,132,963 0.82282 0.8675 5.68148 0.17631 4 3
SRR7868791 40 17,764,099 0.8712 0.9279 5.4973 0.13615 4 3
SRR7868792 40 10,198,837 0.84865 0.8872 5.07826 0.1489 4 3
SRR7868793 40 10,452,549 0.84497 0.9 5.33058 0.1537 4 3
SRR7868794 40 11,704,395 0.81701 0.8702 5.92199 0.18334 4 3
SRR7868795 40 10,982,747 0.85225 0.892 4.94262 0.14727 4 2
SRR7868796 40 9,511,065 0.83505 0.8753 4.91818 0.15984 4 2
SRR7868797 40 7,225,637 0.83481 0.8813 5.59756 0.15343 4 3
SRR7868798 40 13,274,308 0.84723 0.9027 5.46541 0.1563 4 3
SRR7868799 40 17,034,678 0.78913 0.9158 4.76068 0.21842 3 2
SRR7868800 40 17,949,439 0.78537 0.9177 4.61265 0.2228 3 2
SRR7868801 40 17,224,645 0.80442 0.9169 5.0708 0.20245 4 3
SRR7868802 40 17,880,681 0.80012 0.915 5.0 0.2072 4 3
SRR7868803 40 17,419,227 0.83089 0.9255 5.19212 0.17604 4 3
SRR7868804 40 15,308,989 0.82285 0.9239 5.01081 0.1823 4 3
SRR7868805 40 16,949,595 0.78387 0.9167 4.32911 0.22307 3 2
SRR7868806 40 18,371,927 0.77985 0.9166 4.26255 0.22876 3 2
SRR7868807 40 17,201,788 0.80022 0.9168 4.54626 0.20669 4 2
SRR7868808 40 17,797,671 0.798 0.9155 4.44351 0.2097 3 2
SRR7868809 40 15,921,543 0.77729 0.9109 4.67265 0.22886 3 2
SRR7868810 40 17,296,001 0.77277 0.9111 4.5261 0.23472 3 2
SRR7868811 40 15,616,231 0.80377 0.9112 4.0 0.20188 4 2
SRR7868812 40 16,657,011 0.80131 0.9122 3.88532 0.20522 4 2
SRR7868813 40 15,233,300 0.79337 0.9121 4.05314 0.21145 3 2
SRR7868814 40 17,045,716 0.7909 0.9125 3.94093 0.21594 3 2
SRR7868815 40 18,682,580 0.75067 0.9146 4.55556 0.25868 3 2
SRR7868816 40 18,056,602 0.74514 0.9134 4.40909 0.26292 3 2
SRR7868817 51 28,205,543 0.82788 0.9563 6.5702 0.18596 4 3
SRR7868818 51 28,004,726 0.82631 0.9559 6.57307 0.18768 4 3
SRR7868819 51 32,719,324 0.81265 0.9542 7.26841 0.20403 4 4
SRR7868820 51 25,470,885 0.81134 0.9541 7.27077 0.20144 4 4
SRR7868821 51 32,385,253 0.82902 0.9563 6.825 0.18681 4 3
SRR7868822 51 30,901,956 0.82712 0.9557 6.75521 0.18823 4 3
Bidirectionals
Sample name Tfit total bidirs Tfit promoter bidirs Tfit intronic bidirs Tfit intergenic bidirs dREG total bidirs dREG promoter bidirs dREG intronic bidirs dREG intergenic bidirs
SRR7868785 729 366 311 10 414 208 173 74
SRR7868786 1203 526 499 29 660 341 267 118
SRR7868787 904 450 360 13 463 236 193 73
SRR7868788 1382 689 533 34 669 367 259 95
SRR7868789 1342 680 511 17 674 362 244 100
SRR7868790 1831 958 688 21 858 490 307 111
SRR7868791 3577 1889 1253 63 1598 1022 489 166
SRR7868792 1252 585 510 32 696 330 288 117
SRR7868793 1442 686 559 32 671 360 263 103
SRR7868794 2343 1208 845 43 1106 643 384 130
SRR7868795 1450 703 550 27 713 390 258 116
SRR7868796 1223 616 472 23 630 320 251 101
SRR7868797 931 455 389 21 438 212 176 79
SRR7868798 1444 633 595 44 873 392 362 163
SRR7868799 6662 3821 2329 369 3748 2527 959 365
SRR7868800 6839 3916 2376 412 3912 2608 1045 398
SRR7868801 5199 2921 1794 186 2742 1822 775 278
SRR7868802 5316 2989 1865 169 2819 1836 770 320
SRR7868803 5069 2812 1784 235 2563 1678 718 287
SRR7868804 4076 2188 1421 191 2132 1329 613 260
SRR7868805 6982 4111 2316 391 3685 2582 899 363
SRR7868806 7394 4360 2418 473 4066 2781 1001 401
SRR7868807 5662 3156 2018 263 2895 1881 822 316
SRR7868808 5664 3128 2011 304 2968 1905 839 353
SRR7868809 6146 3696 1995 314 3447 2385 843 335
SRR7868810 6550 3853 2178 338 3712 2558 944 356
SRR7868811 5006 2809 1694 236 2500 1591 659 340
SRR7868812 5257 2957 1844 256 2638 1680 699 357
SRR7868813 4943 2900 1740 206 2632 1802 704 286
SRR7868814 5514 3232 1881 273 3016 2034 766 339
SRR7868815 7527 4453 2470 331 4422 3056 1101 391
SRR7868816 7020 4086 2356 285 4068 2786 1055 394
SRR7868817 6010 2828 2143 154 3345 2118 1019 297
SRR7868818 6089 2882 2183 158 3322 2080 1003 301
SRR7868819 7732 3554 2744 239 4427 2690 1403 391
SRR7868820 6197 2766 2322 128 3258 2001 1028 262
SRR7868821 6899 3462 2380 154 4047 2554 1201 386
SRR7868822 6737 3264 2410 166 3865 2484 1158 370
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