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Downloads

Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
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For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

Technical details

Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR7746892	2760	Zhang2018timing	PRO-seq variant	ligation	control	True	4	1
SRR7746893	2761	Zhang2018timing	PRO-seq variant	ligation	control	True	4	2
SRR7746894	2762	Zhang2018timing	PRO-seq variant	ligation	control	True	4	1
SRR7746895	2763	Zhang2018timing	PRO-seq variant	ligation	control	True	4	2
SRR7746896	2764	Zhang2018timing	PRO-seq variant	ligation	control	True	4	1
SRR7746897	2765	Zhang2018timing	PRO-seq variant	ligation	control	True	4	2
SRR7746898	2766	Zhang2018timing	PRO-seq variant	ligation	control	True	4	1
SRR7746899	2767	Zhang2018timing	PRO-seq variant	ligation	control	True	4	2
SRZ7746868	2768	Zhang2018timing	PRO-seq variant	ligation	control	True	2	1
SRZ7746871	2769	Zhang2018timing	PRO-seq variant	ligation	control	True	2	2
SRZ7746874	2770	Zhang2018timing	PRO-seq variant	ligation	control	True	2	1
SRZ7746877	2771	Zhang2018timing	PRO-seq variant	ligation	control	True	4	2
SRZ7746880	2772	Zhang2018timing	PRO-seq variant	ligation	control	True	4	1
SRZ7746883	2773	Zhang2018timing	PRO-seq variant	ligation	control	True	1	2
SRZ7746886	2774	Zhang2018timing	PRO-seq variant	ligation	control	True	1	1
SRZ7746889	2775	Zhang2018timing	PRO-seq variant	ligation	control	True	3	2
SRZ7746900	2776	Zhang2018timing	PRO-seq variant	ligation	experimental	False	1	1
SRZ7746902	2777	Zhang2018timing	PRO-seq variant	ligation	experimental	False	1	1
SRZ7746904	2778	Zhang2018timing	PRO-seq variant	ligation	control	True	2	1
SRZ7746906	2779	Zhang2018timing	PRO-seq variant	ligation	control	True	1	1

Cellular details

Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR7746892	H. sapiens	cell line	KBM7
SRR7746893	H. sapiens	cell line	KBM7
SRR7746894	H. sapiens	cell line	KBM7
SRR7746895	H. sapiens	cell line	KBM7
SRR7746896	H. sapiens	cell line	KBM7
SRR7746897	H. sapiens	cell line	KBM7
SRR7746898	H. sapiens	cell line	KBM7
SRR7746899	H. sapiens	cell line	KBM7
SRZ7746868	H. sapiens	cell line	HEK293
SRZ7746871	H. sapiens	cell line	HEK293
SRZ7746874	H. sapiens	cell line	HEK293
SRZ7746877	H. sapiens	cell line	HEK293
SRZ7746880	H. sapiens	cell line	HEK293
SRZ7746883	H. sapiens	cell line	HEK293
SRZ7746886	H. sapiens	cell line	HEK293
SRZ7746889	H. sapiens	cell line	HEK293
SRZ7746900	H. sapiens	cell line	KBM7
SRZ7746902	H. sapiens	cell line	KBM7
SRZ7746904	H. sapiens	cell line	KBM7
SRZ7746906	H. sapiens	cell line	KBM7

Conditions

Sample name	Condition type	Treatment	Start time	End time	Duration
SRR7746892	no treatment		None	None	None
SRR7746893	no treatment		None	None	None
SRR7746894	no treatment		None	None	None
SRR7746895	no treatment		None	None	None
SRR7746896	no treatment		None	None	None
SRR7746897	no treatment		None	None	None
SRR7746898	no treatment		None	None	None
SRR7746899	no treatment		None	None	None
SRZ7746868	no treatment		None	None	None
SRZ7746871	no treatment		None	None	None
SRZ7746874	no treatment		None	None	None
SRZ7746877	no treatment		None	None	None
SRZ7746880	no treatment		None	None	None
SRZ7746883	no treatment		None	None	None
SRZ7746886	no treatment		None	None	None
SRZ7746889	no treatment		None	None	None
SRZ7746900	treatment	triptolide (1 microM)	-10 min	0 min	10 min
SRZ7746902	treatment	triptolide (1 microM)	-10 min	0 min	10 min
SRZ7746904	vehicle	DMSO	-10 min	0 min	10 min
SRZ7746906	vehicle	DMSO	-10 min	0 min	10 min

Sample metrics

Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR7746892	51	84,106,664	0.9039	0.9004	3.89358	0.3181	4	2
SRR7746893	51	34,891,179	0.87944	0.8734	3.46069	0.18568	4	2
SRR7746894	51	82,264,685	0.83847	0.9073	3.63676	0.54623	4	2
SRR7746895	51	81,359,072	0.86059	0.894	3.66144	0.34007	4	2
SRR7746896	51	82,678,714	0.85361	0.8904	3.62027	0.5223	4	2
SRR7746897	51	75,717,901	0.83139	0.9077	3.6936	0.53067	4	2
SRR7746898	51	111,644,496	0.92267	0.9153	3.62832	0.47179	4	2
SRR7746899	51	85,895,355	0.94269	0.9203	3.6436	0.20915	4	2
SRZ7746868	51	62,943,913	0.58196	0.8994	4.06312	0.64229	2	2
SRZ7746871	51	55,369,085	0.62398	0.9138	3.7655	0.61998	2	2
SRZ7746874	51	78,315,206	0.64312	0.924	3.5349	0.71915	2	2
SRZ7746877	51	52,175,749	0.90166	0.9012	3.69553	0.17165	4	2
SRZ7746880	51	58,059,245	0.89803	0.9109	3.58844	0.38408	4	2
SRZ7746883	51	63,280,865	0.42139	0.9282	3.28047	0.80068	1	2
SRZ7746886	51	54,840,146	0.34061	0.8953	3.89296	0.81186	1	2
SRZ7746889	51	127,414,652	0.67619	0.9081	3.62539	0.75572	3	2
SRZ7746900	76	27,506,689	0.36175	0.9072	3.88591	0.71284	1	2
SRZ7746902	76	24,642,275	0.38573	0.9391	4.16058	0.69091	1	2
SRZ7746904	76	20,191,885	0.60462	0.9044	3.86416	0.5009	2	2
SRZ7746906	76	26,718,631	0.38492	0.9222	4.21436	0.71637	1	2

Bidirectionals

Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR7746892	15451	7000	6482	1723	15089	8310	5201	1768
SRR7746893	9086	3856	3445	1082	9537	6352	2700	867
SRR7746894	19468	9249	7912	2387	18380	8153	7101	2723
SRR7746895	17639	7944	7400	1923	17504	8627	6442	2320
SRR7746896	18609	7881	8008	2666	19460	8844	7673	3018
SRR7746897	20403	8294	8952	3093	21194	9095	8632	3498
SRR7746898	14476	6029	6351	1794	15632	7997	5566	2088
SRR7746899	9408	3779	3885	1064	9747	6087	2948	1011
SRZ7746868	30987	11901	14077	4778	26890	10669	11468	4841
SRZ7746871	25690	10734	11198	3467	21639	9744	8506	3324
SRZ7746874	27938	13066	11203	4241	28927	10688	12797	5488
SRZ7746877	8780	3523	3519	969	7865	5482	2089	717
SRZ7746880	11222	4609	4756	1244	11364	7520	3284	1144
SRZ7746883	32189	14430	12617	5703	31046	10512	14206	6344
SRZ7746886	39325	16132	16170	7041	31765	10487	14195	6795
SRZ7746889	38227	14891	16101	6894	35913	10622	16575	8313
SRZ7746900	26440	11620	10592	4138	19925	8280	7821	3373
SRZ7746902	27876	11799	11495	4563	20811	8662	8223	3611
SRZ7746904	19277	6584	8800	2841	14147	7369	5100	1914
SRZ7746906	29106	10616	13061	4635	20295	8318	8023	3562