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Paper Details

Kourtis2018oncogenic
Samples in dataset (Table view)
SRZ5861742
SRZ5861744
SRZ5861746
SRZ5861748
SRZ5861750
SRZ5861752
SRZ5861754
SRZ5861756
SRZ5861758
SRZ5861760
SRZ5861762
SRZ5861764
SRZ5861766
SRZ5861768
SRZ5861770
SRZ5861772
SRZ5861774
SRZ5861776
SRZ5861778
SRZ5861780
SRZ5861782
SRZ5861784
SRZ5861786
SRZ5861788
SRZ5861790
SRZ5861792
SRZ5861794
SRZ5861796
SRZ5861798
SRZ5861800
Downloads (all samples in dataset)
TDFs (visualization files) Zip archive 1.2 Gb
Read counts and bidirectional calls Zip archive 230 Mb
Paper Details
SRP accession SRP113457
GEO accession GSE101803
Protocol GRO-seq
Organisms H. sapiens
Library Prep not noted in GEO or publication
Spike-in
Published Yes
Year 2018
First Author Kourtis
Last Author Aifantis
DOI 10.1038/s41591-018-0105-8
Full citation Nikos Kourtis, Charalampos Lazaris, Kathryn Hockemeyer, Juan Carlos Balandran, Alejandra R. Jimenez, Jasper Mullenders, Yixiao Gong, Thomas Trimarchi, Kamala Bhatt, Hai Hu, Liza Shrestha, Alberto Ambesi-Impiombato, Michelle Kelliher, Elisabeth Paietta, Gabriela Chiosis, Monica L. Guzman, Adolfo A. Ferrando, Aristotelis Tsirigos, and Iannis Aifantis. Oncogenic hijacking of the stress response machinery in T cell acute lymphoblastic leukemia. Nature Medicine, 24(8):1157-1166, 2018.
Median QC score
Information
3.0
ATAC-seq? No
RNA-seq? Yes
ChIP-seq? Yes
3D Seq? No
Other Seq? Yes