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Paper Details
Nair2019phase
| TDFs (visualization files) | Zip archive | 2.1 Gb |
| Read counts and bidirectional calls | Zip archive | 150 Mb |
| SRP accession | SRP108498 , SRP154849 , SRP154850 , SRP176659 |
| GEO accession | GSE99539 , GSE117493 , GSE117494 , GSE124826 |
| Protocol | GRO-seq |
| Organisms | H. sapiens, M. musculus |
| Library Prep | circularization |
| Spike-in | |
| Published | Yes |
| Year | 2019 |
| First Author | Nair |
| Last Author | Rosenfeld |
| DOI | 10.1038/s41594-019-0190-5 |
| Full citation | Sreejith J. Nair, Lu Yang, Dario Meluzzi, Soohwan Oh, Feng Yang, Meyer J. Friedman, Susan Wang, Tom Suter, Ibraheem Alshareedah, Amir Gamliel, Qi Ma, Jie Zhang, Yiren Hu, Yuliang Tan, Kenneth A. Ohgi, Ranveer Singh Jayani, Priya R. Banerjee, Aneel K. Aggarwal, and Michael G. Rosenfeld. Phase separation of ligand-activated enhancers licenses cooperative chromosomal enhancer assembly. Nature structural and molecular biology, 26(3):193-203, 2019. |
|
Median QC score
|
1.0 |
| ATAC-seq? | Yes |
| RNA-seq? | No |
| ChIP-seq? | Yes |
| 3D Seq? | Yes |
| Other Seq? | No |