DBNascent | Samples

SRR1552480,SRR1552481,SRR1552482,...

**Downloads**
Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
ZIP archive	ZIP archive	ZIP archive	ZIP archive
For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

**Technical details**
Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR1552480	489	Core2014analysis	GRO-cap	ligation	control	True	4	1
SRR1552481	490	Core2014analysis	GRO-cap	ligation	control	True	4	1
SRR1552482	491	Core2014analysis	GRO-cap	ligation	control	True	4	1
SRR1552483	492	Core2014analysis	GRO-cap	ligation	control	True	4	1
SRR1552484	493	Core2014analysis	GRO-seq	ligation	control	True	1	1
SRR1552485	494	Core2014analysis	GRO-seq	ligation	control	True	2	1
SRZ1554311	495	Core2014analysis	PRO-seq	ligation	control	True	3	1

**Cellular details**
Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR1552480	H. sapiens	cell line	K562
SRR1552481	H. sapiens	cell line	K562
SRR1552482	H. sapiens	cell line	GM12878
SRR1552483	H. sapiens	cell line	GM12878
SRR1552484	H. sapiens	cell line	K562
SRR1552485	H. sapiens	cell line	GM12878
SRZ1554311	H. sapiens	cell line	K562

**Conditions**
Sample name	Condition type	Treatment	Start time	End time	Duration
SRR1552480	no treatment		None	None	None
SRR1552481	no treatment		None	None	None
SRR1552482	no treatment		None	None	None
SRR1552483	no treatment		None	None	None
SRR1552484	no treatment		None	None	None
SRR1552485	no treatment		None	None	None
SRZ1554311	no treatment		None	None	None

**Sample metrics**
Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR1552480	50	36,901,127	0.84217	0.9326	8.85766	0.26917	4	4
SRR1552481	50	18,771,966	0.83493	0.8947	4.82486	0.24143	4	2
SRR1552482	50	35,958,909	0.86553	0.9329	8.8624	0.27416	4	4
SRR1552483	50	11,312,598	0.83759	0.8814	6.38843	0.17115	4	3
SRR1552484	50	23,068,567	0.38257	0.8294	2.4302	0.68368	1	1
SRR1552485	100	165,033,535	0.60446	0.9026	2.65126	0.72983	2	1
SRZ1554311	100	446,848,236	0.68616	0.9492	2.73542	0.8192	3	1

**Bidirectionals**
Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR1552480	43523	12786	18155	12953	40837	11619	16952	12531
SRR1552481	17338	8060	6327	3002	17619	9352	5656	3205
SRR1552482	37396	11893	17618	8527	34316	10738	15962	7794
SRR1552483	14244	7057	5598	1768	14059	8367	4479	1637
SRR1552484	23247	8512	9831	4441	18289	8127	6109	4095
SRR1552485	49013	17109	19515	12037	54332	9769	27425	15498
SRZ1554311	38434	15935	12595	10061	106561	9322	51556	42873