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Downloads

Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
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For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

Technical details

Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR9007616	706	Etchegaray2019histone	PRO-seq	ligation	control	True	1	1
SRR9007621	707	Etchegaray2019histone	PRO-seq	ligation	experimental	False	1	1
SRR9007624	708	Etchegaray2019histone	PRO-seq	ligation	experimental	False	1	1
SRZ9007617	709	Etchegaray2019histone	PRO-seq	ligation	control	True	1	2
SRZ9007619	710	Etchegaray2019histone	PRO-seq	ligation	control	True	2	3
SRZ9007622	711	Etchegaray2019histone	PRO-seq	ligation	experimental	False	1	2
SRZ9007625	712	Etchegaray2019histone	PRO-seq	ligation	experimental	False	1	2
SRZ9007627	713	Etchegaray2019histone	PRO-seq	ligation	experimental	False	1	3

Cellular details

Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR9007616	M. musculus	cell line	ESC		129/Sv
SRR9007621	M. musculus	cell line	ESC		129/Sv
SRR9007624	M. musculus	cell line	ESC		129/Sv	Sirt6 -/-
SRZ9007617	M. musculus	cell line	ESC		129/Sv
SRZ9007619	M. musculus	cell line	ESC		129/Sv
SRZ9007622	M. musculus	cell line	ESC		129/Sv
SRZ9007625	M. musculus	cell line	ESC		129/Sv	Sirt6 -/-
SRZ9007627	M. musculus	cell line	ESC		129/Sv	Sirt6 -/-

Conditions

Sample name	Condition type	Treatment	Start time	End time	Duration
SRR9007616	no treatment		None	None	None
SRR9007621	treatment	glucose-free media	-2 day	0 day	2 day
SRR9007624	no treatment		None	None	None
SRZ9007617	no treatment		None	None	None
SRZ9007619	no treatment		None	None	None
SRZ9007622	treatment	glucose-free media	-2 day	0 day	2 day
SRZ9007625	no treatment		None	None	None
SRZ9007627	no treatment		None	None	None

Sample metrics

Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR9007616	80	62,616,710	0.43789	0.6687	5.21106	0.65453	1	3
SRR9007621	80	73,475,791	0.21797	0.7723	3.66833	0.81085	1	2
SRR9007624	80	64,231,414	0.30665	0.689	3.95838	0.74166	1	2
SRZ9007617	80	112,592,586	0.41945	0.6848	4.43559	0.75169	1	2
SRZ9007619	80	61,963,592	0.5303	0.4809	6.46222	0.59941	2	3
SRZ9007622	80	115,154,799	0.41464	0.6265	3.8891	0.76245	1	2
SRZ9007625	80	108,096,843	0.37147	0.677	4.07979	0.7486	1	2
SRZ9007627	80	52,626,293	0.36767	0.4056	5.52305	0.65269	1	3

Bidirectionals

Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR9007616	32176	9037	11135	9361	31317	7512	11173	9364
SRR9007621	38630	9016	12777	14343	40155	6718	15657	14713
SRR9007624	33774	8611	11094	11579	36622	7807	13322	12578
SRZ9007617	30539	9269	9689	9236	37551	6879	14212	12587
SRZ9007619	21232	6897	7246	4478	20397	6535	6418	4840
SRZ9007622	37486	9315	12373	13034	38571	6371	14805	13901
SRZ9007625	38886	9741	12263	13982	45038	7667	16434	16995
SRZ9007627	21729	6430	7012	5562	18862	6130	5601	4985