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Sample Details

SRR5364061,SRR5364072,SRZ5364052,...
Downloads
Gene read counts Bidirectional read counts Tfit regions dREG regions
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For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.
Technical details
Sample name Sample ID Paper identifier Protocol Library prep Control/Experimental Wildtype & Untreated QC score Replicate
SRR5364061 835 Franco2018enhancer GRO-seq circularization control True 1 2
SRR5364072 836 Franco2018enhancer GRO-seq circularization control True 2 2
SRZ5364052 837 Franco2018enhancer GRO-seq circularization control True 3 1
SRZ5364053 838 Franco2018enhancer GRO-seq circularization control True 3 2
SRZ5364056 839 Franco2018enhancer GRO-seq circularization control True 4 1
SRZ5364057 840 Franco2018enhancer GRO-seq circularization control True 4 2
SRZ5364060 841 Franco2018enhancer GRO-seq circularization control True 2 1
SRZ5364063 842 Franco2018enhancer GRO-seq circularization control True 1 1
SRZ5364064 843 Franco2018enhancer GRO-seq circularization control True 1 2
SRZ5364067 844 Franco2018enhancer GRO-seq circularization control True 1 1
SRZ5364068 845 Franco2018enhancer GRO-seq circularization control True 1 2
SRZ5364071 846 Franco2018enhancer GRO-seq circularization control True 3 1
SRZ5364074 847 Franco2018enhancer GRO-seq circularization control True 3 1
SRZ5364075 848 Franco2018enhancer GRO-seq circularization control True 2 2
SRZ5364078 849 Franco2018enhancer GRO-seq circularization control True 3 1
SRZ5364079 850 Franco2018enhancer GRO-seq circularization control True 3 2
SRZ5364082 851 Franco2018enhancer GRO-seq circularization control True 3 1
SRZ5364083 852 Franco2018enhancer GRO-seq circularization control True 3 2
SRZ5364086 853 Franco2018enhancer GRO-seq circularization control True 2 1
SRZ5364087 854 Franco2018enhancer GRO-seq circularization control True 2 2
SRZ5364090 855 Franco2018enhancer GRO-seq circularization control True 2 1
SRZ5364091 856 Franco2018enhancer GRO-seq circularization control True 2 2
SRZ5364094 857 Franco2018enhancer GRO-seq circularization control True 2 1
SRZ5364095 858 Franco2018enhancer GRO-seq circularization control True 2 2
SRZ5364098 859 Franco2018enhancer GRO-seq circularization control True 1 1
SRZ5364099 860 Franco2018enhancer GRO-seq circularization control True 2 2
Cellular details
Sample name Organism Sample type Cell type Clone/Individual Strain Genotype Construct
SRR5364061 H. sapiens cell line MCF7
SRR5364072 H. sapiens cell line UACC812
SRZ5364052 H. sapiens cell line 76NF2V
SRZ5364053 H. sapiens cell line 76NF2V
SRZ5364056 H. sapiens cell line MCF10A
SRZ5364057 H. sapiens cell line MCF10A
SRZ5364060 H. sapiens cell line MCF7
SRZ5364063 H. sapiens cell line ZR751
SRZ5364064 H. sapiens cell line ZR751
SRZ5364067 H. sapiens cell line MDA-MB-361
SRZ5364068 H. sapiens cell line MDA-MB-361
SRZ5364071 H. sapiens cell line UACC812
SRZ5364074 H. sapiens cell line SKBR3
SRZ5364075 H. sapiens cell line SKBR3
SRZ5364078 H. sapiens cell line AU565
SRZ5364079 H. sapiens cell line AU565
SRZ5364082 H. sapiens cell line HCC1954
SRZ5364083 H. sapiens cell line HCC1954
SRZ5364086 H. sapiens cell line MDA-MB-468
SRZ5364087 H. sapiens cell line MDA-MB-468
SRZ5364090 H. sapiens cell line HCC1937
SRZ5364091 H. sapiens cell line HCC1937
SRZ5364094 H. sapiens cell line MDA-MB-231
SRZ5364095 H. sapiens cell line MDA-MB-231
SRZ5364098 H. sapiens cell line MDA-MB-436
SRZ5364099 H. sapiens cell line MDA-MB-436
Conditions
Sample name Condition type Treatment Start time End time Duration
SRR5364061 no treatment None None None
SRR5364072 no treatment None None None
SRZ5364052 no treatment None None None
SRZ5364053 no treatment None None None
SRZ5364056 no treatment None None None
SRZ5364057 no treatment None None None
SRZ5364060 no treatment None None None
SRZ5364063 no treatment None None None
SRZ5364064 no treatment None None None
SRZ5364067 no treatment None None None
SRZ5364068 no treatment None None None
SRZ5364071 no treatment None None None
SRZ5364074 no treatment None None None
SRZ5364075 no treatment None None None
SRZ5364078 no treatment None None None
SRZ5364079 no treatment None None None
SRZ5364082 no treatment None None None
SRZ5364083 no treatment None None None
SRZ5364086 no treatment None None None
SRZ5364087 no treatment None None None
SRZ5364090 no treatment None None None
SRZ5364091 no treatment None None None
SRZ5364094 no treatment None None None
SRZ5364095 no treatment None None None
SRZ5364098 no treatment None None None
SRZ5364099 no treatment None None None
Sample metrics
Sample name Raw read length Trim read depth Duplication proportion Proportion reads mapped Exon/intron ratio Unique read proportion Sample QC score Sample NRO score
SRR5364061 50 26,781,324 0.43601 0.8703 4.24365 0.64665 1 3
SRR5364072 51 60,399,502 0.60482 0.8693 1.08837 0.68534 2 3
SRZ5364052 50 55,209,044 0.74976 0.9078 3.49095 0.33018 3 2
SRZ5364053 50 52,767,615 0.6728 0.9405 2.8 0.42935 3 1
SRZ5364056 51 49,192,213 0.89876 0.8619 1.05121 0.31756 4 2
SRZ5364057 51 51,056,223 0.84519 0.869 1.15032 0.43444 4 2
SRZ5364060 50 78,719,157 0.57035 0.8472 3.47311 0.63891 2 3
SRZ5364063 51 57,242,054 0.48378 0.923 4.76988 0.65514 1 2
SRZ5364064 51 50,484,049 0.408 0.9299 4.41209 0.69353 1 2
SRZ5364067 50 63,621,168 0.47093 0.9363 4.97756 0.69145 1 2
SRZ5364068 50 55,987,980 0.44818 0.9364 4.82122 0.70468 1 2
SRZ5364071 51 49,645,940 0.66302 0.8691 1.03959 0.61109 3 3
SRZ5364074 51 62,819,221 0.7546 0.9388 4.90894 0.35704 3 2
SRZ5364075 51 62,415,634 0.61199 0.9374 4.81328 0.49961 2 2
SRZ5364078 51 65,024,573 0.6848 0.944 5.0925 0.43092 3 3
SRZ5364079 51 61,095,084 0.71627 0.9427 5.60185 0.41998 3 3
SRZ5364082 51 62,417,700 0.74818 0.8695 1.08242 0.53491 3 3
SRZ5364083 51 58,975,653 0.69898 0.8693 0.99168 0.56958 3 3
SRZ5364086 51 50,343,557 0.55262 0.9314 3.88194 0.55707 2 2
SRZ5364087 51 55,520,391 0.58239 0.9351 5.07494 0.53862 2 3
SRZ5364090 51 62,355,080 0.60197 0.9426 4.93253 0.51984 2 2
SRZ5364091 51 56,924,147 0.57804 0.9349 5.06471 0.55212 2 3
SRZ5364094 50 71,527,680 0.60923 0.8503 10.1242 0.57392 2 5
SRZ5364095 50 79,694,343 0.61789 0.8414 9.8017 0.57023 2 5
SRZ5364098 51 53,830,226 0.46608 0.9277 3.86237 0.63021 1 2
SRZ5364099 51 67,999,114 0.57945 0.891 4.13829 0.52362 2 2
Bidirectionals
Sample name Tfit total bidirs Tfit promoter bidirs Tfit intronic bidirs Tfit intergenic bidirs dREG total bidirs dREG promoter bidirs dREG intronic bidirs dREG intergenic bidirs
SRR5364061 26596 2137 18492 3206 27120 1504 19545 3603
SRR5364072 52979 5368 33491 11057 72935 5505 45934 18216
SRZ5364052 35895 14768 13912 7337 23990 7608 10185 4929
SRZ5364053 38765 14114 15375 8933 26403 7455 11805 5960
SRZ5364056 11508 2038 6755 2007 10660 2088 5857 2293
SRZ5364057 21611 4572 12242 3515 20266 4818 10943 4008
SRZ5364060 54651 4635 35934 10134 77689 4288 53125 15801
SRZ5364063 44675 18340 16247 10882 36627 9099 16007 9842
SRZ5364064 46667 19229 16639 11582 36351 8991 15991 9910
SRZ5364067 42175 19391 14742 9284 35412 8585 15330 9559
SRZ5364068 44479 19059 15826 10492 35047 8460 15033 9753
SRZ5364071 41800 4289 26381 8577 50885 4251 32029 12291
SRZ5364074 33344 16394 11868 5473 23512 8883 8873 4807
SRZ5364075 38943 18901 13185 7881 30309 9368 12484 7505
SRZ5364078 41132 18470 14535 8462 29690 8866 11715 7751
SRZ5364079 38769 17372 14075 7529 28350 9117 11053 6970
SRZ5364082 37508 4562 23719 7301 47139 4999 29782 10878
SRZ5364083 41398 4825 26536 8171 55664 5100 35764 12827
SRZ5364086 42363 18233 15212 9896 31916 9338 13571 7998
SRZ5364087 43641 18336 16075 9918 33243 9077 14285 8433
SRZ5364090 42438 18735 14769 9263 28501 8314 11519 7092
SRZ5364091 39557 18442 13452 8186 27598 8878 11404 6180
SRZ5364094 38611 3324 26327 5118 62168 3550 44098 8709
SRZ5364095 40515 3585 27583 5463 67742 3781 47953 9881
SRZ5364098 52782 19141 20419 14025 43046 9148 20388 11877
SRZ5364099 46163 18584 18077 10589 38210 8595 18183 9772
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