DBNascent | Samples

SRR1503602,SRR1503603,SRR1503604,...

**Downloads**
Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
ZIP archive	ZIP archive	ZIP archive	ZIP archive
For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

**Technical details**
Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR1503602	865	Fuda2015gaga	GRO-seq	circularization	control	True	5	1
SRR1503603	866	Fuda2015gaga	GRO-seq	circularization	control	True	5	2
SRR1503604	867	Fuda2015gaga	GRO-seq	circularization	experimental	False	4	1
SRR1503605	868	Fuda2015gaga	GRO-seq	circularization	experimental	False	5	2
SRR1503606	869	Fuda2015gaga	GRO-seq	circularization	experimental	False	4	1
SRR1503607	870	Fuda2015gaga	GRO-seq	circularization	experimental	False	5	2

**Cellular details**
Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR1503602	D. melanogaster	cell line	S2
SRR1503603	D. melanogaster	cell line	S2
SRR1503604	D. melanogaster	cell line	S2
SRR1503605	D. melanogaster	cell line	S2
SRR1503606	D. melanogaster	cell line	S2
SRR1503607	D. melanogaster	cell line	S2

**Conditions**
Sample name	Condition type	Treatment	Start time	End time	Duration
SRR1503602	no treatment		None	None	None
SRR1503603	no treatment		None	None	None
SRR1503604	treatment	dsRNA LacZ (10 microg/mL)	-5 day	0 day	5 day
SRR1503605	treatment	dsRNA LacZ (10 microg/mL)	-5 day	0 day	5 day
SRR1503606	treatment	dsRNA Gaf (10 microg/mL)	-5 day	0 day	5 day
SRR1503607	treatment	dsRNA Gaf (10 microg/mL)	-5 day	0 day	5 day

**Sample metrics**
Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR1503602	43	5,166,303	0.44148	0.4753	1.10354	0.41725	5	3
SRR1503603	43	3,590,984	0.43688	0.4576	0.98075	0.37709	5	3
SRR1503604	59	7,866,303	0.39903	0.5149	1.16348	0.49408	4	4
SRR1503605	59	2,456,593	0.31632	0.5113	1.22272	0.44669	5	3
SRR1503606	43	7,773,803	0.51887	0.5242	0.93233	0.39601	4	4
SRR1503607	43	6,980,322	0.53238	0.5671	0.95637	0.37625	5	3

**Bidirectionals**
Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR1503602	6521	2068	1003	483	3583	1157	699	313
SRR1503603	5660	1763	880	338	2604	921	500	245
SRR1503604	7178	2147	1233	601	5380	1219	1195	822
SRR1503605	5437	1640	811	330	2747	910	619	395
SRR1503606	7134	2209	1196	652	4288	1072	823	399
SRR1503607	6585	2046	1031	503	3852	1086	750	371