DBNascent | Samples

SRR2724029,SRR2724030,SRR2724031,...

**Downloads**
Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
ZIP archive	ZIP archive	ZIP archive	ZIP archive
For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

**Technical details**
Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR2724029	894	Gibson2016chemical	GRO-seq	ligation	control	False	2	1
SRR2724030	895	Gibson2016chemical	GRO-seq	ligation	control	False	1	2
SRR2724031	896	Gibson2016chemical	GRO-seq	ligation	experimental	False	2	1
SRR2724032	897	Gibson2016chemical	GRO-seq	ligation	experimental	False	2	2
SRR3500459	898	Gibson2016chemical	GRO-seq	ligation	experimental	False	1	1
SRR13632937	890	Gibson2016chemical	GRO-seq	ligation	experimental	False	2	1
SRR13632938	891	Gibson2016chemical	GRO-seq	ligation	experimental	False	1	2
SRR13632939	892	Gibson2016chemical	GRO-seq	ligation	experimental	False	2	1
SRR13632940	893	Gibson2016chemical	GRO-seq	ligation	experimental	False	2	2

**Cellular details**
Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR2724029	H. sapiens	cell line	MCF7			shRNA luciferase (stable)
SRR2724030	H. sapiens	cell line	MCF7			shRNA luciferase (stable)
SRR2724031	H. sapiens	cell line	MCF7			shRNA Parp1 (stable)
SRR2724032	H. sapiens	cell line	MCF7			shRNA Parp1 (stable)
SRR3500459	H. sapiens	cell line	MCF7			shRNA luciferase (stable)
SRR13632937	H. sapiens	cell line	MCF7			shRNA luciferase (stable)
SRR13632938	H. sapiens	cell line	MCF7			shRNA luciferase (stable)
SRR13632939	H. sapiens	cell line	MCF7			shRNA Parp1 (stable)
SRR13632940	H. sapiens	cell line	MCF7			shRNA Parp1 (stable)

**Conditions**
Sample name	Condition type	Treatment	Start time	End time	Duration
SRR2724029	vehicle	ethanol	-40 min	0 min	40 min
SRR2724030	vehicle	ethanol	-40 min	0 min	40 min
SRR2724031	vehicle	ethanol	-40 min	0 min	40 min
SRR2724032	vehicle	ethanol	-40 min	0 min	40 min
SRR3500459	treatment	PJ34 (1 microM)	-1 hr	0 hr	1 hr
SRR13632937	treatment	17-beta-estradiol	-40 min	0 min	40 min
SRR13632938	treatment	17-beta-estradiol	-40 min	0 min	40 min
SRR13632939	treatment	17-beta-estradiol	-40 min	0 min	40 min
SRR13632940	treatment	17-beta-estradiol	-40 min	0 min	40 min

**Sample metrics**
Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR2724029	43	16,062,738	0.28684	0.8801	1.90991	0.73545	2	1
SRR2724030	43	20,413,591	0.40246	0.8763	1.67107	0.68695	1	1
SRR2724031	43	24,207,709	0.38407	0.5813	2.67227	0.64104	2	1
SRR2724032	43	23,357,144	0.37671	0.6137	2.76221	0.64278	2	1
SRR3500459	43	22,533,256	0.3651	0.8462	2.79289	0.67709	1	1
SRR13632937	43	19,249,719	0.37898	0.8112	2.7194	0.65599	2	1
SRR13632938	43	20,236,526	0.24497	0.9085	1.4818	0.80049	1	1
SRR13632939	43	19,366,888	0.33879	0.8684	2.07849	0.71681	2	1
SRR13632940	43	18,239,015	0.36533	0.8495	2.68173	0.66802	2	1

**Bidirectionals**
Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR2724029	23575	8997	10252	4215	16472	7747	6158	3005
SRR2724030	23617	8968	10060	4510	17447	7954	6740	3318
SRR2724031	27005	11418	11104	4655	19438	9106	7420	3360
SRR2724032	27301	11557	11101	4792	19669	9184	7408	3506
SRR3500459	30697	14588	11552	5031	21846	9708	8246	4070
SRR13632937	26510	12512	10175	4125	18141	9115	6565	2797
SRR13632938	24345	8399	10795	4880	16822	6865	6977	3246
SRR13632939	30165	10393	13209	5906	18899	8293	6971	3956
SRR13632940	27905	11958	11108	4558	17699	8759	6229	2917