DBNascent | Samples

SRM497904,SRM497907,SRM497911,...

**Downloads**
Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
ZIP archive	ZIP archive	ZIP archive	ZIP archive
For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

**Technical details**
Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRM497904	927	Hah2013enhancer	GRO-seq	ligation	control	True	3	1
SRM497907	928	Hah2013enhancer	GRO-seq	ligation	control	True	2	2
SRM497911	929	Hah2013enhancer	GRO-seq	ligation	experimental	False	2	1
SRM497912	930	Hah2013enhancer	GRO-seq	ligation	experimental	False	3	2
SRM497914	931	Hah2013enhancer	GRO-seq	ligation	experimental	False	2	1
SRM497917	932	Hah2013enhancer	GRO-seq	ligation	experimental	False	2	2

**Cellular details**
Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRM497904	H. sapiens	cell line	MCF7
SRM497907	H. sapiens	cell line	MCF7
SRM497911	H. sapiens	cell line	MCF7
SRM497912	H. sapiens	cell line	MCF7
SRM497914	H. sapiens	cell line	MCF7
SRM497917	H. sapiens	cell line	MCF7

**Conditions**
Sample name	Condition type	Treatment	Start time	End time	Duration
SRM497904	vehicle	ethanol	None	None	None
SRM497907	vehicle	ethanol	None	None	None
SRM497911	treatment	17-beta-estradiol (100 nM)	-10 min	0 min	10 min
SRM497912	treatment	17-beta-estradiol (100 nM)	-10 min	0 min	10 min
SRM497914	treatment	17-beta-estradiol (100 nM)	-40 min	0 min	40 min
SRM497917	treatment	17-beta-estradiol (100 nM)	-40 min	0 min	40 min

**Sample metrics**
Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRM497904	40	40,294,026	0.68542	0.6495	3.95778	0.51069	3	2
SRM497907	40	48,714,183	0.64329	0.7924	2.64603	0.62789	2	2
SRM497911	40	40,575,747	0.58981	0.8744	2.68165	0.6098	2	1
SRM497912	40	52,235,114	0.66429	0.8022	2.77734	0.56509	3	1
SRM497914	40	46,484,517	0.6337	0.8465	3.12937	0.57874	2	2
SRM497917	40	38,352,896	0.60657	0.8182	2.51513	0.58944	2	2

**Bidirectionals**
Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRM497904	31725	8183	15679	6046	21063	8622	8276	3998
SRM497907	41733	8756	21743	9122	29387	8848	13104	7059
SRM497911	38799	9715	19412	8063	28099	9277	12296	6290
SRM497912	38875	9380	19699	8059	27862	9351	12137	6108
SRM497914	41935	10035	20678	9356	31072	9576	14052	7088
SRM497917	38565	7961	20169	8509	25477	7946	11602	5689