DBNascent | Samples

SRR1560531,SRR1560532,SRR1560533,...

**Downloads**
Gene read counts	Bidirectional read counts	Tfit regions	dREG regions
ZIP archive	ZIP archive	ZIP archive	ZIP archive
For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives.

**Technical details**
Sample name	Sample ID	Paper identifier	Protocol	Library prep	Control/Experimental	Wildtype & Untreated	QC score	Replicate
SRR1560531	933	Hah2015inflammation	GRO-seq	ligation	control	True	1	1
SRR1560532	934	Hah2015inflammation	GRO-seq	ligation	control	True	3	2
SRR1560533	935	Hah2015inflammation	GRO-seq	ligation	experimental	False	1	1
SRR1560534	936	Hah2015inflammation	GRO-seq	ligation	experimental	False	3	2
SRR1560535	937	Hah2015inflammation	GRO-seq	ligation	experimental	False	1	1
SRR1560536	938	Hah2015inflammation	GRO-seq	ligation	experimental	False	2	2
SRR1560537	939	Hah2015inflammation	GRO-seq	ligation	experimental	False	1	1
SRR1560538	940	Hah2015inflammation	GRO-seq	ligation	experimental	False	3	2

**Cellular details**
Sample name	Organism	Sample type	Cell type	Clone/Individual	Strain	Genotype	Construct
SRR1560531	M. musculus	primary cell	bone marrow derived macrophage		C57BL/6
SRR1560532	M. musculus	primary cell	bone marrow derived macrophage		C57BL/6
SRR1560533	M. musculus	primary cell	bone marrow derived macrophage		C57BL/6
SRR1560534	M. musculus	primary cell	bone marrow derived macrophage		C57BL/6
SRR1560535	M. musculus	primary cell	bone marrow derived macrophage		C57BL/6
SRR1560536	M. musculus	primary cell	bone marrow derived macrophage		C57BL/6
SRR1560537	M. musculus	primary cell	bone marrow derived macrophage		C57BL/6
SRR1560538	M. musculus	primary cell	bone marrow derived macrophage		C57BL/6

**Conditions**
Sample name	Condition type	Treatment	Start time	End time	Duration
SRR1560531	no treatment		None	None	None
SRR1560532	no treatment		None	None	None
SRR1560533	treatment	lipopolysaccharide (100 ng/mL)	-20 min	0 min	20 min
SRR1560534	treatment	lipopolysaccharide (100 ng/mL)	-20 min	0 min	20 min
SRR1560535	treatment	lipopolysaccharide (100 ng/mL)	-60 min	0 min	1 hr
SRR1560536	treatment	lipopolysaccharide (100 ng/mL)	-60 min	0 min	1 hr
SRR1560537	treatment	lipopolysaccharide (100 ng/mL)	-180 min	0 min	3 hr
SRR1560538	treatment	lipopolysaccharide (100 ng/mL)	-180 min	0 min	3 hr

**Sample metrics**
Sample name	Raw read length	Trim read depth	Duplication proportion	Proportion reads mapped	Exon/intron ratio	Unique read proportion	Sample QC score	Sample NRO score
SRR1560531	50	81,090,965	0.42701	0.6986	2.76402	0.7212	1	1
SRR1560532	51	15,561,350	0.42539	0.6381	1.52976	0.60135	3	2
SRR1560533	50	76,863,841	0.45532	0.7088	2.59705	0.68613	1	1
SRR1560534	51	15,300,775	0.43458	0.6412	1.6004	0.59521	3	2
SRR1560535	50	69,567,632	0.49539	0.6688	2.79514	0.62843	1	1
SRR1560536	51	20,232,646	0.55235	0.5977	1.47096	0.50754	2	2
SRR1560537	50	63,099,587	0.46033	0.7039	2.43658	0.66275	1	1
SRR1560538	51	14,506,337	0.45073	0.5952	1.61374	0.55314	3	2

**Bidirectionals**
Sample name	Tfit total bidirs	Tfit promoter bidirs	Tfit intronic bidirs	Tfit intergenic bidirs	dREG total bidirs	dREG promoter bidirs	dREG intronic bidirs	dREG intergenic bidirs
SRR1560531	37385	14488	10810	10066	36922	7757	15534	10997
SRR1560532	25161	5327	12030	5298	15512	4806	5998	3696
SRR1560533	32670	12233	9608	8935	32899	7341	13703	9551
SRR1560534	20488	4316	9612	4458	12228	3907	4682	2950
SRR1560535	30931	11739	9663	7733	29921	7235	12439	8069
SRR1560536	19647	3641	10029	4153	12967	3232	5941	3097
SRR1560537	31053	10958	9795	8587	30037	7220	12350	8551
SRR1560538	14761	3456	6403	3780	9597	2965	3826	2364