Explore DBNascent | browse or search sample metadata
Search
Advanced Search
All Samples
Samples By Dataset
Sample Details
SRR1951426,SRR1951427,SRR1951432,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRR1951426 | 943 | Heinaniemi2016transcription | GRO-seq | circularization | control | True | 3 | 1 |
| SRR1951427 | 944 | Heinaniemi2016transcription | GRO-seq | circularization | experimental | False | 3 | 1 |
| SRR1951432 | 945 | Heinaniemi2016transcription | GRO-seq | circularization | control | True | 1 | 1 |
| SRR1951434 | 946 | Heinaniemi2016transcription | GRO-seq | circularization | experimental | False | 2 | 2 |
| SRR1951435 | 947 | Heinaniemi2016transcription | GRO-seq | circularization | experimental | False | 3 | 1 |
| SRR1951436 | 948 | Heinaniemi2016transcription | GRO-seq | circularization | experimental | False | 4 | 1 |
| SRR1951437 | 949 | Heinaniemi2016transcription | GRO-seq | circularization | experimental | False | 5 | 1 |
| SRZ1951428 | 950 | Heinaniemi2016transcription | GRO-seq | circularization | control | True | 1 | 1 |
| SRZ1951430 | 951 | Heinaniemi2016transcription | GRO-seq | circularization | control | True | 2 | 2 |
| SRZ1951433 | 952 | Heinaniemi2016transcription | GRO-seq | circularization | experimental | False | 1 | 1 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRR1951426 | H. sapiens | cell line | Nalm6 | ||||
| SRR1951427 | H. sapiens | cell line | Nalm6 | ||||
| SRR1951432 | H. sapiens | cell line | REH | ||||
| SRR1951434 | H. sapiens | cell line | REH | ||||
| SRR1951435 | H. sapiens | cell line | REH | ||||
| SRR1951436 | H. sapiens | cell line | REH | ||||
| SRR1951437 | H. sapiens | cell line | REH | ||||
| SRZ1951428 | H. sapiens | cell line | REH | ||||
| SRZ1951430 | H. sapiens | cell line | REH | ||||
| SRZ1951433 | H. sapiens | cell line | REH |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRR1951426 | no treatment | None | None | None | |
| SRR1951427 | treatment | stromal cell co-culture | -24 hr | 0 hr | 1 day |
| SRR1951432 | no treatment | None | None | None | |
| SRR1951434 | treatment | stromal cell co-culture | -24 hr | 0 hr | 1 day |
| SRR1951435 | treatment | stromal cell co-culture | -48 hr | 0 hr | 2 day |
| SRR1951436 | treatment | differentiated (A) | -24 hr | 0 hr | 1 day |
| SRR1951437 | treatment | differentiated (O) | -24 hr | 0 hr | 1 day |
| SRZ1951428 | no treatment | None | None | None | |
| SRZ1951430 | no treatment | None | None | None | |
| SRZ1951433 | treatment | stromal cell co-culture | -24 hr | 0 hr | 1 day |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRR1951426 | 51 | 11,433,352 | 0.47101 | 0.9531 | 3.09855 | 0.53457 | 3 | 2 |
| SRR1951427 | 51 | 10,497,325 | 0.40433 | 0.9396 | 2.60632 | 0.59263 | 3 | 1 |
| SRR1951432 | 51 | 26,504,350 | 0.42809 | 0.9394 | 3.19717 | 0.6387 | 1 | 2 |
| SRR1951434 | 51 | 16,788,561 | 0.47036 | 0.9291 | 3.22619 | 0.56956 | 2 | 2 |
| SRR1951435 | 51 | 11,102,093 | 0.42283 | 0.9454 | 3.18338 | 0.58028 | 3 | 2 |
| SRR1951436 | 51 | 9,549,116 | 0.41692 | 0.9511 | 3.60279 | 0.57718 | 4 | 2 |
| SRR1951437 | 51 | 2,475,705 | 0.58308 | 0.8561 | 2.08219 | 0.35637 | 5 | 1 |
| SRZ1951428 | 51 | 39,866,930 | 0.4207 | 0.9224 | 3.95142 | 0.64905 | 1 | 2 |
| SRZ1951430 | 51 | 35,610,400 | 0.55416 | 0.9185 | 3.76393 | 0.54935 | 2 | 2 |
| SRZ1951433 | 51 | 20,064,695 | 0.48634 | 0.935 | 3.18719 | 0.57325 | 1 | 2 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRR1951426 | 13907 | 5285 | 5995 | 2263 | 8616 | 4318 | 2817 | 1463 |
| SRR1951427 | 14259 | 4662 | 6564 | 2647 | 8626 | 3889 | 3075 | 1672 |
| SRR1951432 | 23519 | 8748 | 9672 | 4501 | 17062 | 6539 | 6857 | 3558 |
| SRR1951434 | 17690 | 6543 | 7386 | 3165 | 11911 | 5389 | 4314 | 2273 |
| SRR1951435 | 14293 | 5945 | 5720 | 2089 | 8702 | 4680 | 2778 | 1308 |
| SRR1951436 | 12123 | 4985 | 5089 | 1544 | 6339 | 3355 | 2012 | 941 |
| SRR1951437 | 1632 | 817 | 554 | 186 | 579 | 383 | 124 | 89 |
| SRZ1951428 | 33512 | 16130 | 12098 | 6064 | 24347 | 8117 | 10370 | 5256 |
| SRZ1951430 | 26427 | 11913 | 10271 | 4585 | 20247 | 8475 | 8074 | 3878 |
| SRZ1951433 | 21683 | 8157 | 9024 | 3955 | 14322 | 6383 | 5314 | 2730 |
Top