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SRZ3223688,SRZ3223690,SRZ3223692,...
| Gene read counts | Bidirectional read counts | Tfit regions | dREG regions |
| ZIP archive | ZIP archive | ZIP archive | ZIP archive |
| For TDF visualization files please see individual sample downloads or dataset pages for prebuilt ZIP archives. | |||
| Sample name | Sample ID | Paper identifier | Protocol | Library prep | Control/Experimental | Wildtype & Untreated | QC score | Replicate |
| SRZ3223688 | 1061 | Jager2016nuclear | GRO-seq | circularization | experimental | False | 2 | 1 |
| SRZ3223690 | 1062 | Jager2016nuclear | GRO-seq | circularization | control | True | 3 | 1 |
| SRZ3223692 | 1063 | Jager2016nuclear | GRO-seq | circularization | experimental | False | 2 | 1 |
| SRZ3223694 | 1064 | Jager2016nuclear | GRO-seq | circularization | control | True | 2 | 1 |
| SRZ3223696 | 1065 | Jager2016nuclear | GRO-seq | circularization | experimental | False | 2 | 1 |
| SRZ3223698 | 1066 | Jager2016nuclear | GRO-seq | circularization | control | True | 2 | 1 |
| Sample name | Organism | Sample type | Cell type | Clone/Individual | Strain | Genotype | Construct |
| SRZ3223688 | M. musculus | tissue | brown adipose tissue | C57BL/6 | Rev-erb-alpha -/- | ||
| SRZ3223690 | M. musculus | tissue | brown adipose tissue | C57BL/6 | |||
| SRZ3223692 | M. musculus | tissue | epididymal white adipose tissue | C57BL/6 | Rev-erb-alpha -/- | ||
| SRZ3223694 | M. musculus | tissue | epididymal white adipose tissue | C57BL/6 | |||
| SRZ3223696 | M. musculus | tissue | inguinal white adipose tissue | C57BL/6 | Rev-erb-alpha -/- | ||
| SRZ3223698 | M. musculus | tissue | inguinal white adipose tissue | C57BL/6 |
| Sample name | Condition type | Treatment | Start time | End time | Duration |
| SRZ3223688 | no treatment | None | None | None | |
| SRZ3223690 | no treatment | None | None | None | |
| SRZ3223692 | no treatment | None | None | None | |
| SRZ3223694 | no treatment | None | None | None | |
| SRZ3223696 | no treatment | None | None | None | |
| SRZ3223698 | no treatment | None | None | None |
| Sample name | Raw read length | Trim read depth | Duplication proportion | Proportion reads mapped | Exon/intron ratio | Unique read proportion | Sample QC score | Sample NRO score |
| SRZ3223688 | 50 | 147,805,090 | 0.53204 | 0.6315 | 2.75262 | 0.61551 | 2 | 1 |
| SRZ3223690 | 50 | 334,010,454 | 0.65697 | 0.6284 | 3.0031 | 0.56607 | 3 | 2 |
| SRZ3223692 | 50 | 141,280,718 | 0.63195 | 0.572 | 2.85965 | 0.48195 | 2 | 1 |
| SRZ3223694 | 50 | 182,564,671 | 0.64464 | 0.5554 | 3.01486 | 0.48104 | 2 | 2 |
| SRZ3223696 | 50 | 117,933,454 | 0.55671 | 0.6393 | 3.19353 | 0.5924 | 2 | 2 |
| SRZ3223698 | 50 | 211,424,743 | 0.5991 | 0.5632 | 3.46801 | 0.59269 | 2 | 2 |
| Sample name | Tfit total bidirs | Tfit promoter bidirs | Tfit intronic bidirs | Tfit intergenic bidirs | dREG total bidirs | dREG promoter bidirs | dREG intronic bidirs | dREG intergenic bidirs |
| SRZ3223688 | 22806 | 10140 | 6485 | 4219 | 32064 | 7643 | 13103 | 8560 |
| SRZ3223690 | 29518 | 12762 | 8023 | 6539 | 52622 | 8239 | 23472 | 17126 |
| SRZ3223692 | 30310 | 11275 | 8977 | 7721 | 37138 | 9218 | 15291 | 9852 |
| SRZ3223694 | 31372 | 12184 | 9079 | 7575 | 38290 | 9020 | 15657 | 10401 |
| SRZ3223696 | 36848 | 13222 | 10361 | 11040 | 42719 | 9331 | 17798 | 12488 |
| SRZ3223698 | 41517 | 15005 | 11189 | 12966 | 54165 | 9326 | 23446 | 17483 |
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